BOL: All Site Activity

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- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 1935 days ago

https://www.nature.com/articles/d41586-020-00114-4 #bioinfo #computing #rule
- Rahul Nayak@rahul
Rahul Nayak bookmarked gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output 1936 days ago

gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines. They compare the performance of gapFinisher against two other published gap filling tools PBJelly and...

https://github.com/kammoji/gapFinisher
- Jit@jit.aber
Jit commented on the bio-script Perl script to count number of Ns in a multifasta file ! 1936 days ago

If you want to count all 'N' in miltifasta file. (base) ? output_2_test git:(master) ? more scaffolds.fasta | grep -Ho N * | uniq -c 12 draft_summary.info:N 1035948 scaffolds.fasta:N 12...
- Jit@jit.aber
Jit bookmarked MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization 1936 days ago

MitoZ is a Python3-based toolkit which aims to automatically filter pair-end raw data (fastq files), assemble genome, search for mitogenome sequences from the genome assembly result, annotate mitogenome (genbank file as result), and mitogenome...

https://github.com/linzhi2013/MitoZ
- BioJoker@biojoker
BioJoker published a news post IgBLAST: a popular NCBI package for classifying and analyzing immunoglobulin (IG) and T cell... 1936 days ago

IgBLAST is a popular NCBI package for classifying and analyzing immunoglobulin (IG) and T cell receptor (TCR) variable domain sequences
- Jit@jit.aber
Jit bookmarked GfaViz: flexible and interactive visualization of GFA sequence graphs 1937 days ago

GFA (Graphical Fragment Assembly) is an emerging standard format for representing sequence graphs. Although it was originally conceived as a format for sequence assembly (hence the name), and this remains its core application, it is more general,...

https://github.com/ggonnella/gfaviz
- Jit@jit.aber
Jit bookmarked modelStudio: a package automates the explanation of machine learning predictive models 1937 days ago

The modelStudio package automates the explanation of machine learning predictive models. This package generates advanced interactive and animated model explanations in the form of a serverless HTML site. It...

https://modeloriented.github.io/modelStudio/index.html
- Jit@jit.aber
Jit published a news post New Layout for BLAST ftp Database Site 1938 days ago

New Layout for BLAST ftp Database Site
Comments
- Jit@jit.aber
  
  Jit 1924 days ago
  The transition to the new default database version, dbV5, for BLAST+ is now complete. For more details please see Blog.
  Team also uploaded a 2019-nCoV Sequences (Wuhan coronavirus) database to our FTP site, labeled Betacoronavirus.
- Neel@neelam
Neel posted to the wire 1939 days ago

Awk hack for bioinformatician https://www.shellhacks.com/awk-print-column-change-field-separator-linux-bash/ #Hack #Bioinfo #Bash
- Jit@jit.aber
Jit bookmarked Trelliscope: flexibly visualize large, complex data in great detail from within the R statistical... 1939 days ago

Trelliscope provides a way to flexibly visualize large, complex data in great detail from within the R statistical programming environment. Trelliscope is a component in the DeltaRho environment. For those familiar with Trellis...

http://deltarho.org/docs-trelliscope/#introduction
- Jit@jit.aber
Jit posted to the wire 1939 days ago

Walkin for National Genomics Core project at CDFD, Hyderabad http://www.cdfd.org.in/empc/EMPC_Advt_1-Jan-20.pdf #Genomics #Hyderabad #WalkIn #Project #cdfd #NGC #India
- BioStar@biostar
BioStar posted a new ad in the Opportunity Computational Biology Summer Research Programme 1939 days ago
- Rahul Nayak@rahul
Rahul Nayak commented on a bookmark RGFA: powerful and convenient handling of assembly graphs 1940 days ago

The Graphical Fragment Assembly (GFA) is a proposed format which allow to describe the product of sequence assembly. This gem implements the proposed specifications for the GFA format described under...
- Rahul Nayak@rahul
Rahul Nayak bookmarked De novo Genome Assembly for Illumina Data 1940 days ago

Written and maintained by Simon Gladman - Melbourne Bioinformatics (formerly VLSCI) Protocol Overview / Introduction In this protocol we discuss and outline the process of de novo assembly for small to medium sized...

https://www.melbournebioinformatics.org.au/tutorials/tutorials/assembly/assembly-protocol/
- Rahul Nayak@rahul
Rahul Nayak created a new bio-script Perl subroutine to creating kmer ! 1940 days ago
- Rahul Nayak@rahul
Rahul Nayak commented on the blog Important Journals, Blogs and Forums for Bioinformaticians 1940 days ago

Bioinformcs software are published by Genome Biology - Software section https://genomebiology.biomedcentral.com/submission-guidelines/preparing-your-manuscript/software
- Rahul Agarwal@raag
Rahul Agarwal posted a new ad in the Opportunity The El-Sherif Group, Chair of Developmental Biology, Department of Biology - PhD Position 1941 days ago
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 1941 days ago

https://www.8ecm.si/ #mathematics #conference #slovenia
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 1941 days ago

https://societymanagement.com/ilc4-2020-in-san-francisco-october-16-18-2020/ #ilc #conference
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 1941 days ago

https://www.studying-in-germany.org/top-german-universities-for-international-students/ #top #german #university

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