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- Jit@jit.aber
Jit bookmarked FUMA GWAS: Functional Mapping and Annotation of Genome-Wide Association Studies 2163 days ago

FUMA is a platform that can be used to annotate, prioritize, visualize and interpret GWAS results. The SNP2GENE function takes GWAS summary statistics as an input, and provides extensive functional annotation for all SNPs in genomic...

https://fuma.ctglab.nl/
- Jit@jit.aber
Jit bookmarked Apollo: First instantaneous, collaborative genomic annotation editor available on the Web 2164 days ago

Apollo is a plug-in for the JBrowse Genome Viewer. In addition to genes and pseudogenes, users can annotate ncRNAs (snRNA, snoRNA, tRNA, rRNA), miRNAs, repeat regions, and transposable elements; each annotation type has its own...

http://genomearchitect.github.io/
- Nadia Baig@Nadia
Nadia Baig joined the group Single molecule Sequencing (SMS) 2165 days ago
- Nadia Baig@Nadia
Nadia Baig joined the group Comparative Genomics !! 2165 days ago
- Nadia Baig@Nadia
Nadia Baig answered the question WHich method is best to convert pacBio reads in .sra format to .fastq format? 2165 days ago

Okay I will try thanks.
- Archana Malhotra@archana
Archana Malhotra commented on an answer to a question 2165 days ago

Try HECIL, a new long read correction tool. https://github.com/NDBL/HECIL
- Rahul Nayak@rahul
Rahul Nayak is now a friend with Nadia Baig 2165 days ago
Rahul Nayak@rahul
Nadia Baig@Nadia
- Nadia Baig@Nadia
Nadia Baig is now a friend with Rahul Nayak 2165 days ago
Nadia Baig@Nadia
Rahul Nayak@rahul
- Jit@jit.aber
Jit bookmarked snakepipes: A toolkit based on snakemake and python for analysis of NGS data 2165 days ago

snakePipes are flexible and powerful workflows built using snakemake that simplify the analysis of NGS data. DNA-mapping* ChIP-seq* RNA-seq* ATAC-seq* scRNA-seq Hi-C Whole Genome Bisulfite Seq/WGBS (*Also available in...

https://github.com/maxplanck-ie/snakepipes
- Jit@jit.aber
Jit posted to the wire 2165 days ago

What is Comparative Genomics? https://www.news-medical.net/life-sciences/What-is-Comparative-Genomics.aspx #Comparative #Genomics
- BioStar@biostar
BioStar posted to the wire 2166 days ago

Bioinformatics internship https://internshala.com/internship/detail/bioinformatics-internship-in-bangalore-at-bayeslabs1559038161 #Bioinformatics #Internship #Bangalore #bayeslabs
- Nadia Baig@Nadia
Nadia Baig commented on an answer to a question 2166 days ago

fastq-dump --split-spot path/to/local/file/SRR649944.sra
- Neel@neelam
Neel commented on an answer to a question 2166 days ago

I always prefer EBI: This way is better than fastq-dump. EBI has fastq files to squarely download and use. got to EBI http://www.ebi.ac.uk/ena/data/view/SRR121576 replace SRR121576 with your id name. By the way , did you...
- Archana Malhotra@archana
Archana Malhotra answered the question How to install LoRDEC? 2166 days ago

Try HECIL, a new long read correction tool. https://github.com/NDBL/HECIL
- Neel@neelam
Neel commented on an answer to a question 2166 days ago

I always prefer EBI: This way is better than fastq-dump. EBI has fastq files to squarely download and use. got to EBI http://www.ebi.ac.uk/ena/data/view/SRR121576 replace SRR121576 with your id name. By the way , did you...
- Nadia Baig@Nadia
Nadia Baig answered the question How to install LoRDEC? 2166 days ago

Thanks neelam. To install HALC both BLASR and Lordec are needed.
- Neel@neelam
Neel answered the question WHich method is best to convert pacBio reads in .sra format to .fastq format? 2166 days ago

I always prefer EBI: This way is better than fastq-dump. EBI has fastq files to squarely download and use. got to EBI http://www.ebi.ac.uk/ena/data/view/SRR121576 replace SRR121576 with your id name. By the way , did you...
- Neel@neelam
Neel answered the question How to install LoRDEC? 2167 days ago

It is certainly off topic, but HALC is the best choice for correction of long PacBio reads, when both, read size and quality, are the main focus of the analysis. Lordec is not very useful and surprisingly...
- Nadia Baig@Nadia
Nadia Baig answered the question WHich method is best to convert pacBio reads in .sra format to .fastq format? 2168 days ago

fastq-dump --split-spot path/to/local/file/SRR649944.sra
- Rahul Nayak@rahul
Rahul Nayak answered the question WHich method is best to convert pacBio reads in .sra format to .fastq format? 2169 days ago

Can you please share your command used ?

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