BOL: All Site Activity

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- Abhi@abhinav
Abhi created a new bio-script Genome Scaffolding and gap filling ! 1290 days ago
- Neel@neelam
Neel commented on the blog Basic command-line to run BLAST 1291 days ago

Detail tutorial here https://www.ncbi.nlm.nih.gov/books/NBK279684/
- Neel@neelam
Neel bookmarked Bioinformatics Tutorial ! 1291 days ago

This site aims to be a useful resource for bioinformatics beginners. Feel free to jump right in with the section most relevant to you, and if you're not sure, then the place to start is definitely Unix

https://astrobiomike.github.io/
- Neel@neelam
Neel published a blog post Langya Virus Update ! 1302 days ago

Virus
- Neel@neelam
Neel posted to the wire 1304 days ago

Genbank2GFF https://github.com/bioperl/bioperl-live/blob/master/bin/bp_genbank2gff3 #Genbank #GFF
- Neel@neelam
Neel created a new bio-script Script to rapid genome clustering based on pairwise ANI 1305 days ago
- Neel@neelam
Neel commented on the bio-script Conda command to install checkV 1305 days ago

More at https://bitbucket.org/berkeleylab/checkv/src/master/
- Neel@neelam
Neel created a new bio-script Conda command to install checkV 1305 days ago
Comments
- Neel@neelam
  
  Neel 1305 days ago
  More at https://bitbucket.org/berkeleylab/checkv/src/master/
- Neel@neelam
Neel commented on a bookmark CheckM:Assessing the quality of microbial genomes recovered from isolates, single cells, and... 1305 days ago

MOre at https://bitbucket.org/berkeleylab/checkv/src/master/
- Neel@neelam
Neel commented on a bookmark CheckM:Assessing the quality of microbial genomes recovered from isolates, single cells, and... 1306 days ago

CheckM for Metagenome https://linsalrob.github.io/ComputationalGenomicsManual/CheckM/
- Jit@jit.aber
Jit posted a new ad in the Opportunity Bioinformaticians in comparative and evolutionary genomics 1312 days ago
- Jit@jit.aber
Jit bookmarked auN: a new metric to measure assembly contiguity 1312 days ago

Given a de novo assembly, we often measure the “average” contig length by N50. N50 is neither the real average nor median. It is the length of the contig such that this and longer contigs cover at least 50% of the assembly. A...

https://lh3.github.io/2020/04/08/a-new-metric-on-assembly-contiguity
- Neel@neelam
Neel commented on the blog How to install Perl modules manually, using CPAN command, and other quick ways in the group Perl *PIPERs 1315 days ago

If you are on Ubuntu https://packages.ubuntu.com/bionic/bioperl sudo apt-get install <name_mentioned_in_list>
- Jit@jit.aber
Jit bookmarked Monkeypox virus isolate MPXV_USA_2022_MA001, complete genome 1319 days ago

LOCUS ON563414 197205 bp DNA linear VRL 30-MAY-2022 DEFINITION Monkeypox virus isolate MPXV_USA_2022_MA001, complete genome. ACCESSION ON563414 VERSION ON563414.3 KEYWORDS . SOURCE Monkeypox virus...

https://www.ncbi.nlm.nih.gov/nuccore/ON563414
- Jit@jit.aber
Jit posted to the wire 1328 days ago

Linux command cheatsheet https://www.xmind.net/m/WwtB/#
- Shruti Paniwala@shruti
Shruti Paniwala published a blog post Understanding DUMP files from NCBI Taxonomy database ! 1330 days ago

Taxonomy database !
- Neel@neelam
Neel created a new bio-script Install Read Simulator 1335 days ago
- Shruti Paniwala@shruti
Shruti Paniwala posted a new ad in the ResearchLabs lsugenomics Lab 1338 days ago
- Shruti Paniwala@shruti
Shruti Paniwala published a blog post SLURM Commands 1339 days ago

commands
- Shruti Paniwala@shruti
Shruti Paniwala bookmarked Human Complete Genome 1339 days ago

Telomere-to-telomere consortium We have sequenced the CHM13hTERT human cell line with a number of technologies. Human genomic DNA was extracted from the cultured cell line. As the DNA is native, modified bases will be preserved. The data includes...

https://www.science.org/doi/10.1126/science.abj6987

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