BOL: All Site Activity

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- Neel@neelam
Neel commented on a page titled Installing ELGG on Ubuntu ! 912 days ago

sudo apt-get -y --reinstall install phpmyadmin; sudo service apache2 restart;
- Neel@neelam
Neel commented on a bookmark Fix rewritable error of ELGG ! 912 days ago

sudo systemctl restart apache2 Now, create an .htaccess file in the web root. sudo nano /var/www/html/.htaccess Add this line at the top of the new file to activate the rewrite...
- Neel@neelam
Neel published a blog post Installing ELGG on Ubuntu ! 912 days ago

Elgg hosting on ubuntu server !
- Neel@neelam
Neel bookmarked Quip: Aggressive compression of FASTQ, SAM and BAM files. 912 days ago

This will help us to reduce the amount of drive space we take up and decrease data transfer times Quip compresses next-generation sequencing data with extreme prejudice. It supports input and output in...

https://github.com/dcjones/quip
- Neel@neelam
Neel created a new bio-script Bash command to remove /r 917 days ago
- Neel@neelam
Neel bookmarked GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations 918 days ago

The GenomeQC web application is implemented in R/Shiny version 1.5.9 and Python 3.6 and is freely available at https://genomeqc.maizegdb.org/ under the GPL license. All source code and a containerized version of the GenomeQC pipeline is...

https://github.com/HuffordLab/GenomeQC
- Neel@neelam
Neel created a new bio-script Command line to move all files from a directory ! 919 days ago
- Rahul Nayak@rahul
Rahul Nayak bookmarked Snakemake Tutorials ! 927 days ago

A lesson introducing the Snakemake workflow system for bioinformatics analysis. Prerequisites This is an intermediate lesson and assumes learners have already done some bioinformatics: Familiarity with the BASH command shell, including...

https://carpentries-incubator.github.io/snakemake-novice-bioinformatics/aio/index.html
- Rahul Nayak@rahul
Rahul Nayak bookmarked MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer... 940 days ago

MUM&Co is able to detect:Deletions, insertions, tandem duplications and tandem contractions (>=50bp & <=150kb)Inversions (>=1kb) and translocations (>=10kb)

https://github.com/SAMtoBAM/MUMandCo
- Rahul Nayak@rahul
Rahul Nayak bookmarked PuffAligner: a fast, efficient and accurate aligner based on the Pufferfish index 945 days ago

PuffAligner, a fast, accurate and versatile aligner built on top of the Pufferfish index. PuffAligner is able to produce highly sensitive alignments, similar to those of Bowtie2, but much more quickly. While exhibiting similar speed to the ultrafast...

https://github.com/COMBINE-lab/pufferfish/tree/cigar-strings
- Neel@neelam
Neel bookmarked Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation 963 days ago

Merfin, a k-mer based variant-filtering algorithm for improved accuracy in genotyping and genome assembly polishing. Merfin evaluates each variant based on the expected k-mer multiplicity in the reads, independently of the quality of the...

https://github.com/arangrhie/merfin
- Neel@neelam
Neel bookmarked R Shiny in Life Sciences – Top 7 Dashboard Examples 965 days ago

R Shiny is one of the easiest ways for developers to make production-ready dashboards when speed and functionality are crucial. Shiny is approachable with a lot of documentation available, and because of this, a lot of developers/researchers...

https://www.r-bloggers.com/2022/03/r-shiny-in-life-sciences-top-7-dashboard-examples/
- Neel@neelam
Neel bookmarked The complete sequence of a human genome 966 days ago

The completed regions include all centromeric satellite arrays, recent segmental duplications, and the short arms of all five acrocentric chromosomes, unlocking these complex regions of the genome to variational and functional studies.

https://www.science.org/doi/10.1126/science.abj6987
- Neel@neelam
Neel created a new bio-script Bash script to convert multiline fasta to single line fasta ! 967 days ago
- Neel@neelam
Neel posted to the wire 967 days ago

BLAST+ 2.13.0 now available with SRA BLAST, ARM Linux executables, and database metadata! https://loom.ly/O0WxVJI #NCBIBLAST
- Neel@neelam
Neel created a new bio-script Bash command to explore assembly summary genbank ! 969 days ago
- Neel@neelam
Neel posted to the wire 969 days ago

Ten quick tips for deep learning in biology https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009803 #Biology #Tools #Learn
- Neel@neelam
Neel posted to the wire 969 days ago

Ten simple #rules for making a #software #tool #workflow-ready https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009823
- Neel@neelam
Neel posted to the wire 969 days ago

Ten simple #rules for finding and selecting #R #packages https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009884
- Jit@jit.aber
Jit created a new bio-script Commands to Find and replace in file(s0) ! 970 days ago

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