BOL

This meeting's objective was to obtain a big picture look at the current state of the field of comparative genomics with a focus on commonalities across genomic investigations into humans, model organisms (both traditional and...

https://www.researchgate.net/publication/357925950_FastRemap_A_Tool_for_Quickly_Remapping_Reads_between_Genome_Assemblies

CrossMap is a program for genome coordinates conversion between different assemblies (such as hg18 (NCBI36) <=> hg19 (GRCh37)). It supports commonly used file formats...

Fold the FASTA sequences with length $ fold -w 100 genome.fa #Fasta #Genome #Fold #Break #Length

https://endeavors.unc.edu/disassembling-evolutions-engine/ #Rotifers #Evolution

HIV resources https://www.hiv.lanl.gov/components/sequence/HIV/search/search.html

compare two BWA mapping methods with the online hg18-mapped data We first operate a rapid inspection of the different BAM files using samtools flagstat. Illumina provided chr21 read mapping obtained with their GA IIx deep...

srun --partition=compute --nodes=1 --ntasks-per-node=40 --pty bash

Gaussian Network Model (GNM) is a powerful tool to sample conformational dynamics based on contact topology in a coarse-grained presentation. Here we present a method to consider protein dynamics in the presence of ‘environment’ (1). The...

https://dst.gov.in/sites/default/files/NSM_Course_AAI_0122.pdf #AI #courses

This is a comprehensive guide to prepare for your next coding interview. It's great for recent graduates and has questions and practice materials structured from traditional big tech interview formats.While it does not include the latest...

This tool detects statistically validated events of gene acquisitions with the help of the T-REX algorithm by comparing individual gene tree with NCBI species tree. In between the steps, the workflow decides about handling paralogs, filtering...

Bioinformatics books https://cbirt.net/bioinformatics-books/ #Bioinformatics #Books

Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), and synteny). One is comparing human GENCODE genes (from GENCODE v30) to lncRNAs...