BOL: All Site Activity

All Site Activity

- Anjana@anjana
Anjana is now a friend with Siva Shanmugam 3077 days ago
Anjana@anjana
Siva Shanmugam@SivaNR
- Siva Shanmugam@SivaNR
Siva Shanmugam is now a friend with Anjana 3077 days ago
Siva Shanmugam@SivaNR
Anjana@anjana
- Jit@jit.aber
Jit commented on a bookmark R and Bioconductor Tutorial in the group R and Bioconductor 3077 days ago

R tutorial for bioinformatician http://www.introductoryr.co.uk/R_Resources_for_Beginners.html
- EagleEye@santhilalsubhash
EagleEye answered the question RNAseq dataset for different cancers stages !! 3077 days ago

Try this, https://www.biostars.org/p/197581/#197600 For long non-coding...
- EagleEye@santhilalsubhash
EagleEye created a page Convert EnsEMBL GTF to Annotation table (Geneid, GeneSymbol, GeneWiseChrLocation, GeneClass,... 3077 days ago

Bash Script source: https://gist.github.com/santhilalsubhash/367befcf5216be4b1fd9 Information: This script converts EnsEMBL GTF...
- EagleEye@santhilalsubhash
EagleEye created a new bio-script Calculate confidence interval for multiple columns in a matrix (table) using R function CI_normal... 3077 days ago
- EagleEye@santhilalsubhash
EagleEye commented on the bio-script RPKM normalization- R script 3077 days ago

Using Perl script, http://bioinformaticsonline.com/snippets/view/28043/rpkm-normalization-perl
- EagleEye@santhilalsubhash
EagleEye commented on the bio-script RPKM normalization - Perl 3077 days ago

Using R script, http://bioinformaticsonline.com/snippets/view/28042/rpkm-normalization-r-script
- EagleEye@santhilalsubhash
EagleEye commented on the bio-script RPKM normalization - Perl 3077 days ago

Usage: perl rpkm_script_beta.pl sample_count_test.count 2:9 28 > sample_count_test.rpkm Colum1 in the input matrix is gene name, column 2 to 9 samples with corresponding counts and column 28 is length of each corresponding gene More info:...
- EagleEye@santhilalsubhash
EagleEye created a new bio-script RPKM normalization - Perl 3077 days ago
Comments
- EagleEye@santhilalsubhash
  
  EagleEye 3077 days ago
  Usage: perl rpkm_script_beta.pl sample_count_test.count 2:9 28 > sample_count_test.rpkm
  Colum1 in the input matrix is gene name, column 2 to 9 samples with corresponding counts and column 28 is length of each corresponding gene
  More info: https://github.com/santhilalsubhash/rpkm_rnaseq_count
  
  Sample input:
  https://github.com/santhilalsubhash/rpkm_rnaseq_count/blob/master/sample_count_test.count
- EagleEye@santhilalsubhash
  
  EagleEye 3077 days ago
  Using R script,
  
  http://bioinformaticsonline.com/snippets/view/28042/rpkm-normalization-r-script
- EagleEye@santhilalsubhash
EagleEye created a new bio-script RPKM normalization- R script 3077 days ago
Comments
- EagleEye@santhilalsubhash
  
  EagleEye 3077 days ago
  Using Perl script,
  
  http://bioinformaticsonline.com/snippets/view/28043/rpkm-normalization-perl
- EagleEye@santhilalsubhash
EagleEye created a page Tool: Gene Set Clustering based on Functional annotation (GeneSCF) 3077 days ago

----------- Gene Set Clustering based on Functional annotation GeneSCF serves as command line tool for clustering the list of genes given by the users based on functional annotation (Gene Ontology, KEGG, REACTOME and NCG...
- EagleEye@santhilalsubhash
EagleEye commented on the blog List of gene ontology software and tools 3077 days ago

http://bioinformaticsonline.com/blog/view/28037/tool-gene-set-clustering-based-on-functional-annotation-genescf
- EagleEye@santhilalsubhash
EagleEye posted a new ad in the ResearchLabs Prof. Chandrasekhar Kanduri Laboratory 3077 days ago
- EagleEye@santhilalsubhash
EagleEye has a new avatar 3077 days ago
- Poonam Mahapatra@poonam
Poonam Mahapatra posted to the wire 3077 days ago

#Extract all #Reads from #BAM file for a #region Chr10:18000-45500 using #samtools: samtools view input.bam "Chr10:18000-45500" > output.bam
- Jit@jit.aber
Jit posted to the wire 3077 days ago

#Network #Visualization in #R #Tutorial http://kateto.net/network-visualization
- Hardeep Kaur@hardeep
Hardeep Kaur commented on a bookmark List of Bioinformatics Vacancy, Jobs, Opportunity websites 3077 days ago

Thanks for all useful links. I found this job website also very useful https://www.timeshighereducation.com/unijobs/searchjobs/?Keywords=bioinformatics&radialtown=&LocationId=&RadialLocation=5
- Shruti Paniwala@shruti
Shruti Paniwala posted to the wire 3078 days ago

#Extract #tabbed info from #BAM file with samtools: samtools view test.bam|awk '{print $1 "\t" $2 "\t" $3 "\t" $4 "\t" $4+length($10)-1}' > file.xls
- Jit@jit.aber
Jit bookmarked WgSim 3078 days ago

Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/deletion (INDEL) polymorphisms, and simulate reads with uniform substitution sequencing...

https://github.com/lh3/wgsim

BOL

Our Sponsors

All Site Activity