BOL

To know about your OS: lsb_release -ra #Trick #OS #Linux

For R and Bioinformatics jobs, visit http://www.r-users.com/jobs/

This refers to haplotype phase (aka gametic phase). This essentially means knowing which allele belongs to which copy of the chromosome, or alternatively, which alleles appear together on the same chromosome. In short-read...

Hi There,  I recently came across a new term "phasing". What does it mean? I only know it means "genes separated by chromosome" only, can anyone please explain it for me. Thanks in advance.

#genoPlotR - plot #gene and #genome #maps project! http://genoplotr.r-forge.r-project.org/

Install terminal on right click on Ubuntu: sudo apt-get install nautilus-open-terminal ; nautilus -q ; #Ubuntu #Linux #Terminal #Open

Following are the steps, as suggested by @mira_talk 1. Reference sequences loaded and transformed into contigs, each contig containing exactly one read. 2. Sequence of each contig is cut into overlapping pieces (called rails). Length of rails: 2*...

MIRA follows for the ref based assembly (like mapping the reads on the reference with xxx, etc.) and if its possible to have a figure with the workflow.

Bioinformatics #scientist openings at #THSTI, India http://thsti.res.in/down_file.php?file=146770901039THS-RN-21-2016.pdf

This webpage lists some of the one-liners that we frequently use in metagenomic analyses. You can click on the following links to browse through different topics. You can copy/paste the commands as they are in your terminal screen, provided you...

#GATK and #Picard to filter low quality variants https://insidedna.me/tutorials/view/gatk-picard-filter-vcf-variants-snp

USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate than CLUSTALW.  UPARSE >OTU clustering for 16S and other marker genes....