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- Archana Malhotra@archana
Archana Malhotra posted to the wire 3587 days ago

NGS exercise http://wiki.bits.vib.be/index.php/NGS_Exercise.5 #NGS #VIB #Training #Exercise
- Anjana@anjana
Anjana posted a new ad in the Opportunity Senior Manager (Bioinformatics Operations) at RGCB, India 3587 days ago
- Shyam I@shyam_ingle
Shyam I is now a friend with Hardeep Kaur 3587 days ago
Shyam I@shyam_ingle
Hardeep Kaur@hardeep
- Hardeep Kaur@hardeep
Hardeep Kaur is now a friend with Shyam I 3587 days ago
Hardeep Kaur@hardeep
Shyam I@shyam_ingle
- Jit@jit.aber
Jit bookmarked TEannot 3588 days ago

We advise to run first the TEdenovo pipeline but it is not compulsory. We suppose you begin by running the TEannot pipeline on the example provided in the directory "db/" rather than directly on your own genomic sequences. Thus, from now on, the...

https://urgi.versailles.inra.fr/Tools/REPET/TEannot-tuto
- Jit@jit.aber
Jit bookmarked RepeatModeler 3588 days ago

RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler are two de-novo repeat finding programs ( RECON and RepeatScout ) which employ complementary computational methods for identifying repeat...

http://www.repeatmasker.org/RepeatModeler.html
- Jit@jit.aber
Jit bookmarked A5-miseq 3588 days ago

_A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform. This README will take you through the steps necessary for running _A5-miseq_. Point to note: There are many situations where A5-miseq is not...

https://sourceforge.net/projects/ngopt/
- Poonam Mahapatra@poonam
Poonam Mahapatra answered the question How to extract 50% of the reads? 3588 days ago

I guess, it will be easier to "split by middle". My suggestions: Count the total number of reads -> use head or tail -n #num command to extract.
- Radha Agarkar@radhaagarkar
Radha Agarkar asked How to extract 50% of the reads? 3588 days ago

I would like to extract a subset of PE reads (50%) and store them in seperate files. It should be in both way "split by middle" or "random". Is there any way to achieve it?
- Radha Agarkar@radhaagarkar
Radha Agarkar posted a new ad in the Opportunity JRF Bioinformatics at MANIT, India 3588 days ago
- Radha Agarkar@radhaagarkar
Radha Agarkar is now a friend with karimse07 3588 days ago
Radha Agarkar@radhaagarkar
karimse07@karimse07
- karimse07@karimse07
karimse07 is now a friend with Radha Agarkar 3588 days ago
karimse07@karimse07
Radha Agarkar@radhaagarkar
- Jit@jit.aber
Jit posted to the wire 3589 days ago

Bioinformatics openings at #IGIB https://www.igib.res.in/sites/default/files/30082016.pdf #Delhi #India #IGIB
- Shruti Paniwala@shruti
Shruti Paniwala posted a new ad in the Opportunity Research Project at IIT, Madras 3589 days ago
- Shruti Paniwala@shruti
Shruti Paniwala posted a new ad in the Opportunity Senior Manager (Bioinformatics Operations) at RGCB, India 3589 days ago
- Shruti Paniwala@shruti
Shruti Paniwala posted to the wire 3589 days ago

Determine your current Java version in Linux OS: java -Xmx90m -version #Java #Linux #Version
- Jit@jit.aber
Jit bookmarked KisSplice 3590 days ago

KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows to identify SNPs, indels and alternative splicing events. It can deal with an arbitrary number...

http://kissplice.prabi.fr/
- Jit@jit.aber
Jit bookmarked OrganellarGenomeDRAW 3590 days ago

OrganellarGenomeDRAW is dedicated to convert genetic information stored in GenBank entries to graphical maps. The input text file has to be in GenBank flat file format, whereas the output format can be chosen among several formats. The...

http://ogdraw.mpimp-golm.mpg.de/index.shtml
- Jit@jit.aber
Jit bookmarked Bambus 3590 days ago

Bambus 2.0, the second generation Bambus scaffolder available as an open source package. While most other scaffolders are closely tied to a specific assembly program, Bambus accepts the output from most current assemblers and provides the user with...

https://www.cbcb.umd.edu/software/bambus2
- Abhimanyu Singh@abhimanyu
Abhimanyu Singh posted a new ad in the Opportunity Research Associate Bioinformatics recruitment in ICGEB, New Delhi 3590 days ago

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