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Abhi on LoReTTA, a user-friendly tool for assembling viral genomes from PacBio sequence data (311 days ago): Detail paper here https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8111061/- BioStar on Perl Module Installation (768 days ago): To install BioPerl on a macOS system, you can follow these steps: Open the...
- Abhi on CovCal: Coverage / Read Count Calculator (929 days ago): Sequencing coverage is defined as the average number of reads that covers...
- Neel on CheckM:Assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes (981 days ago): MOre at https://bitbucket.org/berkeleylab/checkv/src/master/
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Java utilities for Next Generation Sequencing by Pierre Lindenbaum
By Robert M Willioms 3865 days agogithub.com - Java utilities for Bioinformatics https://github.com/lindenb/jvarkitSwabs to Genomes: A Comprehensive Workflow
By Rahul Nayak 3902 days agopeerj.com - The sequencing, assembly, and basic analysis of microbial genomes, once a painstaking and expensive undertaking, has become almost trivial for research labs with access to standard molecular biology and computational tools. However, there are a wide...MEGADOCK 4.0
By Suleman Khan 3904 days agobioinformatics.oxfordjournals.org - An ultra–high-performance protein–protein docking software for heterogeneous supercomputers Summary: The application of protein–protein docking in large-scale interactome analysis is a major challenge in structural bioinformatics...COSMOS, our workflow management system for NGS data
By Jit 3920 days agocosmos.hms.harvard.edu - COSMOS, our Python-based management system for implementing large-scale parallel workflows focusing on, but not restricted to, large-scale short-read "NGS" sequencing data is open-access published via Advance Access in Bioinformatics (Gafni et al....Orione – a web-based framework for NGS analysis in microbiology
By Martin Jones 3920 days agohttp://orione.crs4.it/ - End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotation and metagenomics. However, the construction of computational pipelines that...Integrative Genomics Viewer (IGV) tutorial
By Neel 3930 days agowikis.utexas.edu - The Integrative Genomics Viewer (IGV) from the Broad Center allows you to view several types of data files involved in any NGS analysis that employs a reference genome, including how reads from a dataset are mapped, gene annotations, and predicted...Bioinformatics algorithms tutorials
By John Parker 3949 days agowww.homolog.us - Useful bioinformatics tutorial, such as De Bruijn Graphs for NGS AssemblyAlgorithms for PacBio ReadsSoftware and Hardware Concepts for BioinformaticsFinding us in Homolog.us (Search Algorithms)NGS Genome and RNAseq Assembly - a Hands on...Ten recommendations for creating usable bioinformatics command line software
By RAJESH DETROJA 3965 days agowww.gigasciencejournal.com - Bioinformatics software varies greatly in quality. In terms of usability, the command line interface is the first experience a user will have of a tool. Unfortunately, this is often also the last time a tool will be used. Here I present ten...Bioinformatician’s Pocket Reference !!
By RAJESH DETROJA 3965 days agoinfoplatter.wordpress.com - It is amusing how brain of bioinformaticians work! Learning a new programming language for days feels so much of fun that making 5 minute discussion with neighbours (unless under special circumstances!) in our own mother-tongue. Today every...Metagenomics role in antibiotic resistance
By Rahul Agarwal 3971 days agowww.landesbioscience.com - Related latest article: http://www.nature.com/nature/journal/v509/n7502/pdf/nature13377.pdf
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