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Abhi on LoReTTA, a user-friendly tool for assembling viral genomes from PacBio sequence data (200 days ago): Detail paper here https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8111061/- BioStar on Perl Module Installation (656 days ago): To install BioPerl on a macOS system, you can follow these steps: Open the...
- Abhi on CovCal: Coverage / Read Count Calculator (817 days ago): Sequencing coverage is defined as the average number of reads that covers...
- Neel on CheckM:Assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes (870 days ago): MOre at https://bitbucket.org/berkeleylab/checkv/src/master/
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HairSplitter: assembling long reads in an unknown number of haplotypes
By BioStar 750 days agohal.archives-ouvertes.fr - Pros and cons of HairSplitter Limitations of HairSplitter: Not very fast: it re-polishes the whole assembly Limited in the number of haplotypes Strengths of HairSplitter: Very modular, can be used with any assembler Naive: makes no...Environmental Genomics Group SciLifeLab/KTH Stockholm
By BioStar 755 days agohttps://github.com/envgen - Useful Metagenomics resourcesOneZoom tree of life explorer...
By BioStar 774 days agohttps://www.onezoom.org/ - An interactive map of the evolutionary links between all living things known to science. Discover your favourites, see which species are under threat, and be amazed by the diversity of life on earth.Visualise blast results !
By Abhi 806 days agokablammo.wasmuthlab.org - Kablammo helps you create interactive visualizations of BLAST results from your web browser. Find your most interesting alignments, list detailed parameters for each, and export a publication-ready vector image, all without installing any...Covid Spectrum !
By Abhi 822 days agohttps://cov-spectrum.org/ - https://cov-spectrum.org/explore/World/AllSamples/ CoV-Spectrum supports a wide range of search queries. The following sections presents search options of the basic search bar. For information on the advanced searchCovid Spectrum !
By Abhi 822 days agohttps://cov-spectrum.org/ - https://cov-spectrum.org/explore/World/AllSamples/ CoV-Spectrum supports a wide range of search queries. The following sections presents search options of the basic search bar. For information on the advanced searchCovid Spectrum !
By Abhi 822 days agohttps://cov-spectrum.org/ - https://cov-spectrum.org/explore/World/AllSamples/Executing Snakemake
By Abhi 822 days agosnakemake.readthedocs.io - This part of the documentation describes the snakemake executable. Snakemake is primarily a command-line tool, so the snakemake executable is the primary way to execute, debug, and visualize...gfastats: The swiss army knife for genome assembly.
By Abhi 839 days agogithub.com - gfastats is a single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation. gfastats also allows seamless fasta<>fastq<>gfa[.gz]...Elastic BLAST !
By Abhi 841 days agoblast.ncbi.nlm.nih.gov - ElasticBLAST is a new way to BLAST large numbers of queries, faster and on the cloud. Here are the top three reasons you should use ElasticBLAST: 1. ElasticBLAST can handle much LARGER queries! ElasticBLAST can search query...
