BioStar
Bioinformatician
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- BioStar on Sibelia: A comparative genomics tool (1485 days ago): Basic usage =========== In this manual it is assumed that "Sibelia" is...
- BioStar on AutoDock Vina: an open-source program for doing molecular docking. (1622 days ago): AutoDockFR (or ADFR in short) is a protein-ligand docking...
- BioStar on AutoDock Vina: an open-source program for doing molecular docking. (1622 days ago): QVina-W, a new docking tool particularly useful for wide search space,...
- BioStar on Nextflow: Data-driven computational pipelines (1736 days ago): A Review of Scalable Bioinformatics Pipelines by Bjørn Fjukstad &...
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reads, genome, assembly, data, tool, sequence, sequencing, analysis, package, pipeline, genomic, Correction, Gene, Illumina, Breeding, Bioinformatics, Automated, learn, sequences, accurate, web, program, R, DNA, long, server, tools, alignment, Annotation, metagenomics, genomes, Visualization, error, ngs, PacBio, Ontology, RNA, biological, generation, open-source, software, Genomics, Hi-C, RNA-seq, tree, python, Training, identification, genes, free
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BioStar's bookmarks
RNA-Seq differential expression work flow using DESeq2
By BioStar 1186 days agowww.sthda.com - One of the aim of RNAseq data analysis is the detection of differentially expressed genes. The package DESeq2 provides methods to test for differential expression analysis.The Snakemake Wrappers repository
By BioStar 1190 days agosnakemake-wrappers.readthedocs.io - The Snakemake Wrapper Repository is a collection of reusable wrappers that allow to quickly use popular tools from Snakemake rules and workflows. More at https://github.com/snakemake/snakemake-wrappersUnderstanding kmer !
By BioStar 1191 days agobioinfologics.github.io - What is a k-mer anyway? A k-mer is just a sequence of k characters in a string (or nucleotides in a DNA sequence). Now, it is important to remember that to get all k-mers from a sequence you need to get...Kmer: a suite of tools for DNA sequence analysis
By BioStar 1191 days agohelp.rc.ufl.edu - More at https://help.rc.ufl.edu/doc/Kmer This also includes: A2Amapper: ATAC, Assembly to Assembly Comparision tool: Comparative mapping between two genome assemblies (same species), or between two different genomes (cross...JumboDB: tool for de Bruijn graph construction
By BioStar 1192 days agogithub.com - jumboDB tool for fast de Bruijn graph construction from long sequences (reads or genomes) with very low error rate. JumboDB is not a genome assembler by itself but rather a subroutine that translates a set of reads into compressed de Bruijn...TMRCA Calculator
By BioStar 1387 days agoclandonaldusa.org - This program calculates the probability that two people have a certain number of generations between them, based on the standard infinite alleles formula of Walsh. It calculates both the probability of being at an exact number of...3D Genome Browser: explore chromatin interaction data, such as Hi-C, ChIA-PET, Capture Hi-C,...
By BioStar 1399 days ago3dgenome.fsm.northwestern.edu - Beside visualizing chromatin interaction data, you can also seamlessly browse other omics data such as ChIP-Seq or RNA-Seq for the same genomic region, and gain a complete view of both regulatory landscape and 3D genome structure for any given gene....The Breeding API (BrAPI) project
By BioStar 1415 days agohttps://brapi.org/ - The Breeding API (BrAPI) project is an effort to enable interoperability among plant breeding databases. BrAPI is a standardized RESTful web service API specification for communicating plant breeding data. This community driven standard is free to...Breeding Insight
By BioStar 1415 days agowww.breedinginsight.org - Breeding Insight at Cornell University will leverage recent improvements in genomics and open source informatics components, and in partnership with small breeding programs, will enable these programs to harness powerful digital...Breedbase is a comprehensive breeding management and analysis software
By BioStar 1415 days agohttps://breedbase.org/ - Breedbase is a comprehensive breeding management and analysis software. It can be used to design field layouts, collect phenotypic information using tablets, support the collection of genotyping samples in a field, store large amounts of high...
