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The Wire
#Genome
Wire posts tagged with 'Genome'
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2245 days ago
Ten steps to get started in
#Genome
#Assembly
and
#Annotation
https:/
/
f1000research.com/
articles/
7-148/
v1
Jit
@jit.aber
Thread
By
Jit
2264 days ago
Estimate the genome size
https:/
/
bioinformatics.uconn.edu/
genome-size-estimation-tutorial/
#Genome
#Size
#Estimate
Rahul Agarwal
@raag
Thread
By
Rahul Agarwal
2301 days ago
http:/
/
www.iprotein.info/
#genome
#pathways
#visualisation
Jit
@jit.aber
Thread
By
Jit
2334 days ago
Why are de Bruijn
#graphs
useful for
#genome
#assembly
?
https:/
/
www.ncbi.nlm.nih.gov/
pmc/
articles/
PMC5531759/
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2516 days ago
Convert masked genome to N letters. $ perl -pe '/^[^>]/ and $_=~ s/[a-z]/N/g' genomic.fna > genomic.N-masked.fna
#Genome
#Masked
#N
#Convert
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2516 days ago
Unmasking the lower case values in genome. $ perl -pe '/^[^>]/ and $_=uc' genomic.fna > genomic.unmasked.fna
#Genome
#Unmask
#Perl
#Oneliner
Jit
@jit.aber
Thread
By
Jit
2532 days ago
#Genome
#submission
to
#GenBank
https:/
/
www.ncbi.nlm.nih.gov/
genbank/
genomesubmit/
Jit
@jit.aber
Thread
By
Jit
2579 days ago
Plotting alignment genome.crg.es/software/gfftools/GFF2APLOT.html
#Alignment
#Plot
#Genome
#gff
#gfftools
Jit
@jit.aber
Thread
By
Jit
2610 days ago
Steps for
#Prokaryotic
#genome
#assembly
and
#annotation
http:/
/
www.edamamecourse.org/
docs/
metagenome_assembly_and_annotation.html
Jit
@jit.aber
Thread
By
Jit
2620 days ago
AVID: A Global Alignment Program
https:/
/
www.ncbi.nlm.nih.gov/
pmc/
articles/
PMC430967/
#AVID
#Alignment
#Global
#Sequence
#Genome
Surabhi Chaudhary
@surabhi
Thread
By
Surabhi Chaudhary
2622 days ago
Basics for assembly
http:/
/
ged.msu.edu/
angus/
files/
lecture4-mapping.pdf
#Genome
#Mapping
#Assembly
#PPT
Jit
@jit.aber
Thread
By
Jit
2692 days ago
Mammalian Meiotic Recombination: A Toolbox for Genome Evolution
http:/
/
www.karger.com/
Article/
FullText/
452822
#Mammals
#Genome
#Breakpoints
#Evolution
#Recombination
Hardeep Kaur
@hardeep
Thread
By
Hardeep Kaur
2715 days ago
Genome and coverage
https:/
/
rtsf.natsci.msu.edu/
_rtsf/
assets/
File/
depth%20and%20coverage.pdf
#Coverage
#Genome
#Depth
#Reads
#NGS
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
2742 days ago
Coverage R Plot
http:/
/
davetang.org/
muse/
2013/
09/
07/
creating-a-coverage-plot-in-r/
#R
#Plot
#Genome
#Image
#NGS
#BAM
Jit
@jit.aber
Thread
By
Jit
2788 days ago
Understanding N50
http:/
/
jermdemo.blogspot.be/
2008/
11/
calculating-n50-from-velvet-output.html
#N50
#Assembly
#Genome
#Contigs
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