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- Neel@neelam
Neel commented on a page titled Most Commonly used Awk by Bioinformatician 3210 days ago

Rename the name of multi fasta sequesnces with awk awk '/^>/{print ">chromosome" ++i; next}{print}' < file.fasta
- John Parker@parker
John Parker commented on a page titled Most Commonly used Awk by Bioinformatician 3744 days ago

One of the best known cheat sheet for AWKians www.catonmat.net/download/awk.cheat.sheet.txt
- Rahul Nayak@rahul
Rahul Nayak commented on a page titled Most Commonly used Awk by Bioinformatician 3857 days ago

To deal with simple CSV: awk -F, '{print $1,$2}'
- Shruti Paniwala@shruti
Shruti Paniwala commented on a page titled Most Commonly used Awk by Bioinformatician 3893 days ago

Some of the useful Unix onliner http://genomics-array.blogspot.in/2010/11/some-unixperl-oneliners-for.html
- Alok Prajapati@Alok
Alok Prajapati commented on a page titled Most Commonly used Awk by Bioinformatician 3894 days ago

Most commonly used Unix/Linux command for bioinformatics http://rous.mit.edu/index.php/Unix_commands_applied_to_bioinformatics
- Aaryan Lokwani@aaryan
Aaryan Lokwani commented on a page titled Most Commonly used Awk by Bioinformatician 3912 days ago

I love awk but recommend you to try bioawk . Bioawk is a modified version of awk which will parse some common sequence formats. https://github.com/lh3/bioawk
- Rahul Nayak@rahul
Rahul Nayak commented on a page titled Most Commonly used Awk by Bioinformatician 3940 days ago

Print line of a tab-delimited file when the 8th field is 10090:awk -F "\t" '$8 == 10090 { print $0 }' myFilePrint fields 1, 2, 3 from a tab-delimited file where the 4th field contains a '99':awk -F "\t" '$4 ~ /99/ {print $1"\t"$2"\t"$3}' myFile
- Archana Malhotra@archana
Archana Malhotra commented on a page titled Most Commonly used Awk by Bioinformatician 4041 days ago

Some of the commonly used bioinformatics one-liner by Stephen Turner @ https://github.com/stephenturner/oneliners
- Rahul Nayak@rahul
Rahul Nayak commented on a page titled Most Commonly used Awk by Bioinformatician 4059 days ago

Awk, Linux, R tutorial by EMBL http://www.embl.de/~rausch/primer.pdf
- Poonam Mahapatra@poonam
Poonam Mahapatra commented on a page titled Most Commonly used Awk by Bioinformatician 4133 days ago

To double space a file; $ awk '1; { print "" }' : To prints the number of words in a file; $ awk '{ total = total + NF }; END { print total+0 }' :
- Jitendra Narayan@admin
Jitendra Narayan commented on a page titled Most Commonly used Awk by Bioinformatician 4139 days ago

There is BioAwk, specially designed for bioinformatician by ialbert. .... https://github.com/ialbert/bioawk-tools Njoy
- Archana Malhotra@archana
Archana Malhotra commented on a page titled Most Commonly used Awk by Bioinformatician 4139 days ago

Aakhsyan webpage explain commonly used sed and awk for bioinformatics at http://raunakms.wordpress.com/2013/06/08/sed-and-awk-for-bioinformatics/ Handy OneLiner at http://bioinformatics.whatheblog.com/2010/03/handy-one-liners-awk/ BioUnix...
- Jitendra Narayan@admin
Jitendra Narayan commented on a page titled Most Commonly used Awk by Bioinformatician 4139 days ago

This MIT wiki page demonstration shows how to perform some basic bioinformatics tasks using simple UNIX commands. http://rous.mit.edu/index.php/Unix_commands_applied_to_bioinformatics
- Neel@neelam
Neel created a page Most Commonly used Awk by Bioinformatician 4143 days ago

Awk is a programming language that is specifically designed for quickly manipulating space delimited data. Although you can achieve all its functionality with Perl, awk is simpler in many practical cases. Why awk? You can replace a pipeline...
Comments
- Rahul Nayak@rahul
  
  Rahul Nayak 3857 days ago
  To deal with simple CSV: awk -F, '{print $1,$2}'
- John Parker@parker
  
  John Parker 3744 days ago
  One of the best known cheat sheet for AWKians www.catonmat.net/download/awk.cheat.sheet.txt
- Neel@neelam
  
  Neel 3210 days ago
  Rename the name of multi fasta sequesnces with awk
  awk '/^>/{print ">chromosome" ++i; next}{print}' < file.fasta
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