Points: 485
Poonam Mahapatra
10 PhD positions in Poland http:/
(2398 days ago)
Brief description:
Bioinformatics Researcher
Location:
Orissa, India
Interests:
Skills:
About me
I am a bioinformatician, working as a SRF fellow. Working on Shotgun Assembly database.
Question: How to downgrade the Perl
Question: Alienomics error, how to fix it !
Question: What is the p-value?
Question: Unable to restart Apache !
- Poonam Mahapatra created a new bio-script Install BLAST in Ubuntu/Linux and Window !
- Poonam Mahapatra posted a new ad in the Opportunity Post-doctoral position / Scientist (m/f/d) in Bioinformatics
- Poonam Mahapatra commented on a page titled Bioinformatics Companies in India
- Poonam Mahapatra created a new bio-script Perl6 script to count ATGC !Comments
- Poonam Mahapatra is now a friend with Jit
- By Poonam Mahapatra 2398 days ago10 PhD positions in Poland http:/
/ www.wb.uj.edu.pl/ en_GB/ studia/ phd-biology/ recruitment #Poland #PhD - By Poonam Mahapatra 2413 days ago
- By Poonam Mahapatra 2413 days ago
NGS course Medical Genomics, scheduled for 17-20 September 2013 in UZ Leuven (Belgium).
By Poonam Mahapatra 4150 days agoThe 4-day course is organized as a series of morning lectures and afternoon hands-on workshops.UK Genome Science Meeting, sept 2nd-4th, 2013
By Poonam Mahapatra 4150 days agoUK Genome Science Meeting at Nottingham, UKPhylomeDB
By Poonam Mahapatra 4150 days agoA public database for complete collections of gene phylogenies (phylomes)ISCB System Biology Conference
By Poonam Mahapatra 4151 days agoSystem Biology conference next year 2014
Tools for Protein-Protein Docking !
Last updated 2433 days ago by Poonam MahapatraPredicting the structure of protein–protein complexes using docking approaches is a difficult problem whose major challenges include identifying correct solutions, and properly dealing with molecular flexibility and conformational changes....-
Ligand Docking Tools and Software !
Last updated 2433 days ago by Poonam MahapatraLigand docking referred to cases where small molecule (“ligand”) is being docked into much larger macromolecule ("target"). The following is partial list of docking software, focusing on free (at least for academic institutes) and/or... -
Protein-Protein Interaction Sites Predictions !
Last updated 2433 days ago by Poonam MahapatraThe study of Protein–Protein Interactions (PPIs) has a crucial role in biology, medicine and the pharmaceutical industry. PPIs can be investigated from two aspects: The interaction partners of a specific protein and the amino acid residues... -
Binding Site Prediction in Protein !
Last updated 2433 days ago by Poonam MahapatraThe interaction between proteins and other molecules is fundamental to all biological functions. In this section we include tools that can assist in prediction of interaction sites on protein surface and tools for predicting the structure of the...
Genetic code - Amino Acid
By Poonam Mahapatra 3710 days agoThe genetic code consists of 64 triplets of nucleotides. These triplets are called codons.With three exceptions, each codon encodes for one of the 20 amino acids used in the synthesis of proteins. That produces some redundancy in the code: most of...
HNADOCK: a nucleic acid docking server for modeling RNA/DNA–RNA/DNA 3D complex structures
By Poonam Mahapatra 1661 days agohuanglab.phys.hust.edu.cn - The HNADOCK server is to predict the binding complex structure between two nucleic acid molecules through a hierarchical docking algorihtm of an FFT-based global search strategy and an intrinsic scoring function for nucleic acid interactions. Users...LRSDAY: Long-read Sequencing Data Analysis for Yeasts
By Poonam Mahapatra 1944 days agogithub.com - Long-read sequencing technologies have become increasingly popular in genome projects due to their strengths in resolving complex genomic regions. As a leading model organism with small genome size and great biotechnological importance, the budding...Miropeats: discovers regions of sequence similarity amongst any set of DNA sequences
By Poonam Mahapatra 1944 days agowww.littlest.co.uk - Miropeats discovers regions of sequence similarity amongst any set of DNA sequences and then presents this similarity information graphically. Sequence similarity searching is a very general tool that forms the basis of many different biological...Many-to-many pairwise alignments of two sequence sets
By Poonam Mahapatra 2378 days agoemboss.sourceforge.net - needleall reads a set of input sequences and compares them all to one or more sequences, writing their optimal global sequence alignments to file. It uses the Needleman-Wunsch alignment algorithm to find the optimum alignment (including gaps) of two...
