Next Generation Sequencing (NGS)
https://en.wikipedia.org/wiki/Sequencing
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HASLR: a tool for rapid genome assembly of long sequencing reads
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By Neel 1035 days agogithub.com - This tool extracts heterozygous kmer pairs from kmer count databases and performs gymnastics with them. We are able to disentangle genome structure by comparing the sum of kmer pair coverages (CovA + CovB) to their relative coverage (CovB / (CovA +...Webinar on 'An integrated RNA and DNA approach to unravel genetic regulation in cancer'
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By Jit 2368 days agochagall.med.cornell.edu - RNAseq can be roughly divided into two "types": Reference genome-based - an assembled genome exists for a species for which an RNAseq experiment is performed. It allows reads to be aligned against the reference genome and significantly improves...Modular, efficient and constant-memory single-cell RNA-seq preprocessing
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By Abhi 3661 days agorosalind.info - Rosalind is a platform for learning bioinformatics and programming through problem solving. Take a tour to get the hang of how Rosalind works. http://rosalind.info/problems/list-view/Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
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By BioStar 1596 days agogithub.com - proActiv is an R package that estimates promoter activity from RNA-Seq data. proActiv uses aligned reads and genome annotations as input, and provides absolute and relative promoter activity as output. The package can be used to identify active...Exploring RNA Sequence Analysis: Tools for Every Bioinformatician
By Neel 13 days agoThe bioinformatics landscape for RNA sequence analysis is vast, with tools catering to specific needs. Whether you’re studying coding RNAs, non-coding RNAs, or exploring RNA-protein interactions, the right tools can transform your data into...
