Next Generation Sequencing (NGS)
https://en.wikipedia.org/wiki/Sequencing
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Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
By Jit 1460 days agogithub.com - Hifiasm is a fast haplotype-resolved de novo assembler for PacBio Hifi reads. It can assemble a human genome in several hours and works with the California redwood genome, one of the most complex genomes sequenced so far. Hifiasm can produce...kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity
By Rahul Nayak 2400 days agogithub.com - The k-mer Weighted Inner Product. This software implements a de novo, alignment free measure of sample genetic dissimilarity which operates upon raw sequencing reads. It is able to calculate the genetic dissimilarity between samples without any...RapClust: Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence...
By Rahul Nayak 2272 days agogithub.com - RapClust is a tool for clustering contigs from de novo transcriptome assemblies. RapClust is designed to be run downstream of the Sailfish or Salmon tools for rapid transcript-level quantification. Specifically,...De novo Genome Assembly for Illumina Data
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By Jitendra Narayan 3785 days agoDuring recombination, the precise breakage of each strand, exchange between the strands, and sealing of the resulting recombined molecules happens. The “chromosomal breakpoints” refers to these places where they break.EAGER
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By Archana Malhotra 2840 days agoStructural variation caller tools using long reads
