Single molecule Sequencing (SMS)
Rahul Agarwal 3902 days ago
Our Sponsors
Related items
iSeqQC: a tool for expression-based quality control in RNA sequencing
By BioStar 2214 days agogithub.com - iSeqQC, an expression-based QC tool that detects outliers either produced due to variable laboratory conditions or due to dissimilarity within a phenotypic group. iSeqQC implements various statistical approaches including unsupervised clustering,...Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data
By Jit 1853 days agogithub.com - Ktrim is written in C++ for GNU Linux/Unix platforms. After uncompressing the source package, you can find an executable file ktrim under bin/ directory compiled using g++ v4.8.5 and linked with libz...Assistant Professor at Sher-e- Kashmir University of Agricultural Sciences & Technology of...
Sher-e- Kashmir University of Agricultural Sciences & Technology of Jammu School of Biotechnology Applications are invited from candidates for the temporary positions on contractual basis for academic arrangement in the School of...Bioinformatics tools developed for Oxford Nanopore data analysis !
By biogeek 2995 days ago Comments (2)One of the technical advantages of ONT data is the read length, which offers great prospects for genome assembly.minialign: fast and accurate alignment tool for PacBio and Nanopore long reads
By Jit 2847 days agogithub.com - Minialign is a little bit fast and moderately accurate nucleotide sequence alignment tool designed for PacBio and Nanopore long reads. It is built on three key algorithms, minimizer-based index of the minimap overlapper, array-based seed chaining,...Wtdbg2: a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore
By Neel 2699 days agogithub.com - Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output. Wtdbg2...Nanopore adaptor !
By Jit 2228 days agogithub.com - Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads....
Run miniasm assembler on nanopore reads !
Last updated 3005 days ago by Jit Comments (5)Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream...Cerulean: A hybrid assembly using high throughput short and long reads
By Rahul Nayak 2835 days agosourceforge.net - Cerulean extends contigs assembled using short read datasets like Illumina paired-end reads using long reads like PacBio RS long reads. Cerulean v0.1 has been implemented with bacterial genomes in mind. The method is fully described in...NGS course Medical Genomics, scheduled for 17-20 September 2013 in UZ Leuven (Belgium).
By Poonam Mahapatra 4593 days agoThe 4-day course is organized as a series of morning lectures and afternoon hands-on workshops.
