Jitendra Prajapati
A Bioinformatician
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McClintock: Meta-pipeline to identify transposable element insertions using next generation...
By BioStar 1487 days agogithub.com - an integrated bioinformatics pipeline for the detection of TE insertions in whole-genome shotgun data, called McClintock (https://github.com/bergmanlab/mcclintock), which automatically runs and standardizes output for multiple TE detection methods....GraphUnzip: Phases an assembly graph using Hi-C data and/or long reads.
By Jit 1385 days agogithub.com - GraphUnzip, a fast, memory-efficient and accurate tool to unzip assembly graphs into their constituent haplotypes using long reads and/or Hi-C data. As GraphUnzip only connects sequences in the assembly graph that already had a potential link based...Corona Virus Genome and Data Download !
By Abhi 1075 days agowww.ncbi.nlm.nih.gov - Genes and its related metadata could be found on https://www.ncbi.nlm.nih.gov/datasets/coronavirus/genomes/Orange: Data mining
By BioStar 619 days agoorangedatamining.com - Open source machine learning and data visualization. Build data analysis workflows visually, with a large, diverse toolbox.PhyloHerb: A high‐throughput phylogenomic pipeline for processing genome skimming data
By Abhi 443 days agogithub.com - Phylogenomic Analysis Pipeline for Herbarium Specimens What is PhyloHerb: PhyloHerb is a wrapper program to process genome skimming data collected from plant materials. The outcomes include the plastid genome (plastome) assemblies,...
Libraries or management tools for high throughput sequencing data
Last updated 49 days ago by LEGEGATB Library. The Genome Analysis Toolbox with de-Bruijn graph. A large part of tools developed by the GenScale team are based on this library.These methods enable the analysis of data sets of any size on multi-core desktop...-
Import R Data
Last updated 2689 days ago by Abhimanyu SinghIt is often necessary to import sample textbook data into R before you start working on your homework. Excel File Quite frequently, the sample data is in Excel format, and needs to be imported into R prior to use. For this, we can... NCBI to assist in Virus Hunting Data Science Hackathon
By BioStar 2198 days agoNCBI Hackathon are pleased to announce the second installment of the SoCal Bioinformatics Hackathon. From January 9-11, 2019, the NCBI will help run a bioinformatics hackathon in Southern California hosted by the Computational Sciences Research...De novo Genome Assembly for Illumina Data
By Rahul Nayak 1768 days agowww.melbournebioinformatics.org.au - Written and maintained by Simon Gladman - Melbourne Bioinformatics (formerly VLSCI) Protocol Overview / Introduction In this protocol we discuss and outline the process of de novo assembly for small to medium sized...BioJupies: Automatically Generates RNA-seq Data Analysis Notebooks
By Rahul Nayak 1432 days agoamp.pharm.mssm.edu - With BioJupies you can produce in seconds a customized, reusable, and interactive report from your own raw or processed RNA-seq data through a simple user interface BioJupies now supports user accounts! Sign in from the top right corner of the page...
