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3rd Annual Next Generation Sequencing Asia Congress 2013 at Singapore, Singapore
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The genome factory !!!
By Madhvan Reddy 3966 days agoWorld’s first $1,000 genome enables ‘factory’ scale sequencing for population and disease studiesAmity University Bioinformatics Summer Program - Kolkata
By eliabrodsky 1993 days agoRegistrations are now open for the 2019 Summer Bioinformatics Training program at Amity University, Kolkata.DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
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By Jit 2355 days agogithub.com - A comparative genome scaffolding tool based on MUMmer mScaffolder scaffolds a genome using an existing high quality genome as the reference. It aligns the two genomes using nucmer utility from MUMmer and then orders and orients the contigs of the...KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
By Jit 2334 days ago Comments (1)github.com - KAT is a suite of tools that analyse jellyfish hashes or sequence files (fasta or fastq) using kmer counts. The following tools are currently available in KAT: hist: Create an histogram of k-mer occurrences from a sequence file. Adds metadata in...
My commonly used commands in Bioinformatics
Last updated 2314 days ago by Rahul NayakFYI, I've found it useful to use MUMmer to extract the specific changes that Racon makes, so I can evaluate them individually: minimap -t 24 assembly.fasta long_reads.fastq.gz | racon -t 24 long_reads.fastq.gz - assembly.fasta...
