Radha Agarkar
A Bioinformatician
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gSearch: a fast and flexible general search tool for whole-genome sequencing
By Jit 2301 days agoml.ssu.ac.kr - gSearch compares sequence variants in the Genome Variation Format (GVF) or Variant Call Format (VCF) with a pre-compiled annotation or with variants in other genomes. Its search algorithms are subsequently optimized and implemented in a...Opening for RA/extended SRF in Bioinformatics project by DBT at Bose Institute
The institute has evolved over the years into a multi-disciplinary research organization with stress on fundamental research in its pursuit of advancement of knowledge in Science and technology and at the same time developing highly competent and...Indexcov: fast coverage quality control for whole-genome sequencing
By Jit 2279 days ago Comments (1)github.com - indexcov, an efficient estimator of whole-genome sequencing coverage to rapidly identify samples with aberrant coverage profiles, reveal large-scale chromosomal anomalies, recognize potential batch effects, and infer the sex of a...Research Associate Biotechnology/JRF/Lab. Assistant Indian Institute of Vegetable Research (IIVR)...
F. No.: 2-19/2011-Adm.I Research Associate Biotechnology /JRF / Lab. Assistant recruitment in Indian Institute of Vegetable Research Project: Genomics assisted selection of Solanum chilense introgression lines for enhancing drought...EXCAVATOR: detecting copy number variants from whole-exome sequencing data
By Radha Agarkar 2151 days agosourceforge.net - EXCAVATOR, for the detection of copy number variants (CNVs) from whole-exome sequencing data. EXCAVATOR combines a three-step normalization procedure with a novel heterogeneous hidden Markov model algorithm and a calling method that classifies...Walk-ins for RA, JRF and SRF post in NBAGR, Karnal
ICAR-NATIONAL BUREAU OF ANIMAL GENETIC RESOURCES Near Basant Vihar G.T. Road Bypass P.O. Box No.129, Karnal-132001 (Haryana) A walk-in-Interview is proposed to be held at National Bureau of Animal Genetic Resources, Karnal (Haryana)-132001 at...mosdepth: fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
By Jit 1837 days agogithub.com - mosdepth can output: per-base depth about 2x as fast samtools depth--about 25 minutes of CPU time for a 30X genome.mean per-window depth given a window size--as would be used for CNV calling.the mean per-region given a BED file of regions.a...Research Associate (Biotechnology, Bioinformatics) In National Research Centre on Plant...
Pay Scale:Rs.24000+ 30% HRA) for Ph.D. and for M. Sc Rs.23000/‐ (+ 30% HRA) Educational Requirements:Ph.D. Degree in Bioinformatics/Molecular Biology/Biotechnology/ Genetics/allied sciences; or M. Sc in Bioinformatics/ Biotechnology/Life Sciences/...McClintock: Meta-pipeline to identify transposable element insertions using next generation...
By BioStar 1489 days agogithub.com - an integrated bioinformatics pipeline for the detection of TE insertions in whole-genome shotgun data, called McClintock (https://github.com/bergmanlab/mcclintock), which automatically runs and standardizes output for multiple TE detection methods....Research Associate Bioinformatics job position in NIPGR
NIPGR Recruitment 2015 – Apply for Research Associate Posts NIPGR is commonly known as National Institute of Plant Genome Research. Recently, it’s great opportunity for those candidates who are interested to do job in NIPGR. National Institute of...
