Radha Agarkar
A Bioinformatician
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Synima: Synteny Imaging tool
By Jit 2533 days agogithub.com - Synteny Imaging tool (Synima) written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchainer, and outputs an overview of genome-wide synteny in PDF. Each of...Bioinformatics JRF/SRF position at NATIONAL RESEARCH CENTRE ON PLANT BIOTECHNOLOGY
NATIONAL RESEARCH CENTRE ON PLANT BIOTECHNOLOGY LBS, CENTRE, PUSA CAMPUS, IARI NEW DELHI NEW DELHI – 110 012 WALK- IN –INTERVIEWS Eligible candidates may appear in Walk-in-Interview on May 23, 2014 at 10 AM for the posts of Research...Multi-CAR: a tool of contig scaffolding using multiple references
By Rahul Nayak 2447 days agogenome.cs.nthu.edu.tw - we design a simple heuristic method to further revise our single reference-based scaffolding tool CAR into a new one called Multi-CAR such that it can utilize multiple complete genomes of related organisms as references to more accurately order and...A History of Bioinformatics (in the Year 2039)
By Martin Jones 3770 days agoC. Titus Brown http://video.open-bio.org/video/1/a-history-of-bioinformatics-in-the-year-2039minialign: fast and accurate alignment tool for PacBio and Nanopore long reads
By Jit 2369 days agogithub.com - Minialign is a little bit fast and moderately accurate nucleotide sequence alignment tool designed for PacBio and Nanopore long reads. It is built on three key algorithms, minimizer-based index of the minimap overlapper, array-based seed chaining,...Scientists map 17,294 proteins produced in human body
By Jit 3825 days ago17,294 proteins mapped in 30 organs of human bodyEAGLER: a scaffolding tool for long reads.
By Jit 2358 days agogithub.com - EAGLER is a scaffolding tool for long reads. The scaffolder takes as input a draft genome created by any NGS assembler and a set of long reads. The long reads are used to extend the contigs present in the NGS draft and possibly join overlapping...How to sequence the human genome - Mark J. Kiel
By Rahul Nayak 3823 days agoView full lesson: http://ed.ted.com/lessons/how-to-sequence-the-human-genome-mark-j-kiel Your genome, every human's genome, consists of a unique DNA sequence of A's, T's, C's and G's that tell your cells how to operate. Thanks to technological...mScaffolder: A comparative genome scaffolding tool
By Jit 2347 days agogithub.com - A comparative genome scaffolding tool based on MUMmer mScaffolder scaffolds a genome using an existing high quality genome as the reference. It aligns the two genomes using nucmer utility from MUMmer and then orders and orients the contigs of the...Genomics and Personalized Medicine
By Rahul Nayak 3821 days ago(October 20, 2009) Michael Snyder, Professor of Genetics and Chair of the Department of Genetics at Stanford, discusses advances in gene sequencing, the impact of genomics on medicine, the potential for personalized medicine. and efforts at Stanford...
