Radha Agarkar
A Bioinformatician
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iRNAD: a computational tool for identifying D modification sites in RNA sequence
By Abhimanyu Singh 2050 days agolin-group.cn - iRNAD, for identifying D modification sites in RNA sequence. In this predictor, the RNA samples derived from five species were encoded by nucleotide chemical property and nucleotide density. Support vector machine was utilized to perform the...The 5 reasons to mistakes at bioinformatics work !!!
By Jit 3807 days agoWhen you're just starting out with biological programming, it's easy to run into complex problems that make you wonder how anyone has ever managed to write a program.AirLift, a methodology and tool for comprehensively moving mappings and annotations from one genome...
By Jit 1829 days agogithub.com - We propose AirLift, a methodology and tool for comprehensively moving mappings and annotations from one genome to another similar genome while maintaining the accuracy of a full mapper.PhD opportunity at Université de Liège - Belgium
PhD opportunity at Université de Liège - Belgium The Bioinformatics and Systems Biology Unit of Université de Liège (Belgium) is looking for a highly motivated master student with programming skills for a PhD thesis project (4 years, fully...iSeqQC: a tool for expression-based quality control in RNA sequencing
By BioStar 1774 days agogithub.com - iSeqQC, an expression-based QC tool that detects outliers either produced due to variable laboratory conditions or due to dissimilarity within a phenotypic group. iSeqQC implements various statistical approaches including unsupervised clustering,...MEGADOCK 4.0
By Suleman Khan 3793 days agobioinformatics.oxfordjournals.org - An ultra–high-performance protein–protein docking software for heterogeneous supercomputers Summary: The application of protein–protein docking in large-scale interactome analysis is a major challenge in structural bioinformatics...WEGO : simple but useful tool for visualizing, comparing and plotting GO (Gene Ontology) annotation...
By BioStar 1718 days agowego.genomics.org.cn - WEGO (Web Gene Ontology Annotation Plot) is a simple but useful tool for visualizing, comparing and plotting GO (Gene Ontology) annotation results. As the GO vocabulary became more and more popular, WEGO was widely adopted and used in many...mixtureS: a novel tool for bacterial strain reconstruction from reads
By BioStar 1587 days agowww.cs.ucf.edu - mixtureS that can de novo identify bacterial strains from shotgun reads of a clonal or metagenomic sample, without prior knowledge about the strains and their variations. Tested on 243 simulated datasets and 195 experimental datasets, mixtureS...pybedtools
By Shruti Paniwala 3780 days agopybedtools is a Python wrapper for Aaron Quinlan's BEDtools programs
