Jit
Enthusiast computational biologist with business dream !!!
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Bpipe - a tool for running and managing bioinformatics pipelines
By Radha Agarkar 3577 days agohttp://docs.bpipe.org/ - Bpipe provides a platform for running big bioinformatics jobs that consist of a series of processing stages - known as 'pipelines'. January 20th, 2016 - New! Bpipe 0.9.9 released! Download latest, all Documentation Mailing List (Google...MEME suite
By Bulbul 3362 days agohttp://meme-suite.org/ - Motif based sequence analysis suits The MEME Suite allows the biologist to discover novel motifs in collections of unaligned nucleotide or protein sequences, and to perform a wide variety of other motif-based analyses. The MEME Suite...DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
By Jit 3317 days agohttp://www.ub.edu/dnasp/ - DnaSP is a software package for a comprehensive analysis of DNA polymorphism data. Version 5 implements a number of new features and analytical methods allowing extensive DNA polymorphism analyses on large datasets. Among other features, the newly...CNIDARIA: fast, reference-free phylogenomic clustering
By Shruti Paniwala 3551 days agogithub.com - Motivation: Identification of biological specimens is a major requirement for a range of applications. Reference-free methods analyse unprocessed sequencing data without relying on prior knowledge, but these do not scale to arbitrarily large genomes...SAM flags
By Poonam Mahapatra 3538 days ago Comments (4)broadinstitute.github.io - Decoding SAM flags This utility makes it easy to identify what are the properties of a read based on its SAM flag value, or conversely, to find what the SAM Flag value would be for a given combination of properties. To decode a given SAM flag...Enrichr: a comprehensive gene set enrichment analysis
By Jit 3237 days agoamp.pharm.mssm.edu - Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide experiments. Here we present a significant update to one of the tools in this domain called Enrichr. Enrichr currently contains a large collection of diverse...RNA-seq Analysis Workshop Course Materials
By Jit 2805 days agochagall.med.cornell.edu - RNAseq can be roughly divided into two "types": Reference genome-based - an assembled genome exists for a species for which an RNAseq experiment is performed. It allows reads to be aligned against the reference genome and significantly improves...RNA-Seq Analysis: A Guide for Bioinformaticians
By LEGE 455 days agoRNA-Seq analysis is a cornerstone of modern transcriptomics, offering bioinformaticians a versatile toolkit for unraveling gene expression and regulation. Mastering RNA-Seq workflows and tools empowers researchers to transform raw sequencing data...Strudel
By Anjana 3446 days agoics.hutton.ac.uk - Strudel is our graphical tool for visualizing genetic and physical maps of genomes for comparative purposes. The application aims to let the user examine their data at a variety of different levels of resolution, from entire maps to individual...Bioinformatics tools developed for Oxford Nanopore data analysis !
By biogeek 2992 days ago Comments (2)One of the technical advantages of ONT data is the read length, which offers great prospects for genome assembly.
