code.google.com - You are requested to please bookmark collection of bioinformatics tools, scripts, codes that can be pieced together in a very easy and flexible manner to perform both simple and complex bioinformatics tasks.
The next-generation sequencing included...
github.com - Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop...
chagall.med.cornell.edu - RNAseq can be roughly divided into two "types":
Reference genome-based - an assembled genome exists for a species for which an RNAseq experiment is performed. It allows reads to be aligned against the reference genome and significantly improves...
www.healthcare.uiowa.edu - Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and rarefraction curve analysis. The most basic analysis only requires a BAM file, and outputs a web browser...
Research Associate, Project Fellow (Biological Sciences)
Institute of Genomics & Integrative Biology (IGIB) - New Delhi, Delhi
Pay Scale: Rs. 22,000/- + 30 % HRA per month
Educational Requirements: PhD in any branch of Biological Sciences...
www.well.ox.ac.uk - Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. By using local realignment of reads and local assembly it achieves both high sensitivity and high specificity. Platypus can detect...
Applications are invited from individuals who have high motivation to do research for the DBT sponsored project o n “Establishment of National Repository for Microalgae & Cyanobacteria” funded by Department of Biotechnology, Govt. of India under...
github.com - snakePipes are flexible and powerful workflows built using snakemake that simplify the analysis of NGS data.
DNA-mapping*
ChIP-seq*
RNA-seq*
ATAC-seq*
scRNA-seq
Hi-C
Whole Genome Bisulfite Seq/WGBS
(*Also available in...
Junior Research Fellow (JRF) / Postdoc positions in Cell and Structural biology at ICGEB, New Delhi with Amit Sharma
Research positions are open starting 15th August 2015.
Projects are specifically for protein structure analysis. Projects also...