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IITM-Tokyo Tech Joint Symposium
By Jit 2326 days agoThe IITM-Tokyo Tech Joint Symposium is a biannual international symposium held in Indian Institute of Technology Madras (IITM), India in collaboration with Tokyo Institute of Technology (Tokyo-Tech), Japan.
Industrial Training in Computer Aided Drug Designing (CADD)
Last updated 2306 days ago by JitLearn More about Computer Aided Drug Designing (CADD)!!! #rasalsi #rasa In our Industrial program you will get Knowledge on RNA Seq, CHIP Seq, Batch Starts From 18th November 2019 #hurryup #registernow #enquirenow The primary goal of the...Project Associate-I | Project Associate-II | Senior Project Associate @ IGIB
Experience in Next Generation Sequencing (NGS) application and interest in Genomics/ Clinical / Translational Applications. OR Good computational programming skills and deep interest in working on interface of Genomics and Clinical application....The "Ifs" and "Buts" of NGS Quality Control and Trimming
By BioStar 429 days agoNGS quality control and trimming are essential steps to ensure reliable and accurate data for analysis. While the "ifs" highlight the clear benefits of these steps, the "buts" remind us of the potential pitfalls. By adopting best practices and...-
My commonly used commands in Bioinformatics
Last updated 2782 days ago by Rahul NayakFYI, I've found it useful to use MUMmer to extract the specific changes that Racon makes, so I can evaluate them individually: minimap -t 24 assembly.fasta long_reads.fastq.gz | racon -t 24 long_reads.fastq.gz - assembly.fasta... Referee: Genome assembly quality scores
By Jit 2680 days agogwct.github.io - Modern genome sequencing technologies provide a succint measure of quality at each position in every read, however all of this information is lost in the assembly process. Referee summarizes the quality information from the reads that map to a site...Kevler: Reference-free variant discovery in large eukaryotic genomes
By Jit 2231 days agogithub.com - Welcome to kevlar, software for predicting de novo genetic variants without mapping reads to a reference genome! kevlar's k-mer abundance based method calls single nucleotide variants (SNVs), multinucleotide variants (MNVs),...RNA-Seq Data Pathway and Gene-set Analysis Workflows
By Jit 4516 days agoDescribe the GAGE workflows on RNA-Seq data pathway analysis and gene-set analysis.BioJupies: Automatically Generates RNA-seq Data Analysis Notebooks
By Rahul Nayak 1903 days agoamp.pharm.mssm.edu - With BioJupies you can produce in seconds a customized, reusable, and interactive report from your own raw or processed RNA-seq data through a simple user interface BioJupies now supports user accounts! Sign in from the top right corner of the page...RNA-seq workflow: gene-level exploratory analysis and differential expression
By Jit 1610 days agomaster.bioconductor.org - Here we walk through an end-to-end gene-level RNA-seq differential expression workflow using Bioconductor packages. We will start from the FASTQ files, show how these were quantified to the reference transcripts, and prepare gene-level count...
