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pybedtools
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By Jit 1730 days agogithub.com - Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep convolutional neural network classifier, using many of the architectural advances that have proven successful in image classification. Unlike...Filtlong: quality filtering tool for long reads
By Radha Agarkar 1637 days agogithub.com - Filtlong is a tool for filtering long reads by quality. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the...Bioinformatics JRF/SRF position at IARI
DIVISION OF NEMATOLOGY INDIAN AGRICULTURAL RESEARCH INSTITUTE NEW DELHI 110012 Applications are invited for the posts of one Junior Research Fellow and one RA in the DBT funded project entitled “ Plant parasitic nematode genome informatics -...SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
By BioStar 1541 days agogithub.com - SqueezeMeta is a full automatic pipeline for metagenomics/metatranscriptomics, covering all steps of the analysis. SqueezeMeta includes multi-metagenome support allowing the co-assembly of related metagenomes and the retrieval of individual genomes...AlignGraph2: similar genome-assisted reassembly pipeline for PacBio long reads
By Rahul Nayak 1332 days agogithub.com - AlignGraph2 is the second version of AlignGraph for PacBio long reads. It extends and refines contigs assembled from the long reads with a published genome similar to the sequencing genome. More...URDIP Pune Bioinformatics SRF/PA Openings
CSIR UNIT FOR RESEARCH AND DEVELOPMENT OF INFORMATION PRODUCTS NCL Campus, S.No.113,114, Pashan, Pune 411 008 ADVERTISEMENT NO. - URDIP/ 5/2014 Learning opportunity for young Science and Engineering professionals to make a career in...
Short-read assembly using Spades !
Last updated 1009 days ago by Abhimanyu Singh Comments (2)If we only had Illumina reads, we could also assemble these using the tool Spades. You can try this here, or try it later on your own data. Get data We will use the same Illumina data as we used above: illumina_R1.fastq.gz: the Illumina...Bioinformatics SVIMS Project Assistant Walk IN
SRI VENKATESWARA INSTITUTE OF MEDICAL SCIENCES TIRUPATI, ANDHRA PRADESH, INDIA- 517 507 BIOINFORMATICS CENTRE, DEPARTMENT OF BIOINFORMATICS Eligible candidates are invited for a walk-in-interview for recruitment of Project Assistant in SVIMS...SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
By BioStar 122 days agogithub.com - SqueezeMeta is a full automatic pipeline for metagenomics/metatranscriptomics, covering all steps of the analysis. SqueezeMeta includes multi-metagenome support allowing the co-assembly of related metagenomes and the retrieval of individual genomes...
