Jit
Enthusiast computational biologist with business dream !!!
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Peregrine & SHIMMER Genome Assembly Toolkit
By Abhi 1696 days agogithub.com - Peregrine is a fast genome assembler for accurate long reads (length > 10kb, accuracy > 99%). It can assemble a human genome from 30x reads within 20 cpu hours from reads to polished consensus. It uses Sparse HIereachical MimiMizER (SHIMMER)...Amity University Bioinformatics Summer Program - Kolkata
By eliabrodsky 2614 days agoRegistrations are now open for the 2019 Summer Bioinformatics Training program at Amity University, Kolkata.BIGRE Lab
The Laboratoire de Bioinformatique des Génomes et des Réseaux (Genome and Network Bioinformatics) is specialized in the conception, implementation, evaluation and application of bioinformatics approaches for the analysis of genome, transcriptome,...Shasta long read assembler
By Jit 2398 days ago Comments (1)github.com - The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using as input DNA reads generated by Oxford Nanopore flow cells. Computational methods used by the Shasta assembler include: Using...minialign: fast and accurate alignment tool for PacBio and Nanopore long reads
By Jit 2998 days agogithub.com - Minialign is a little bit fast and moderately accurate nucleotide sequence alignment tool designed for PacBio and Nanopore long reads. It is built on three key algorithms, minimizer-based index of the minimap overlapper, array-based seed chaining,...Rebaler: program for conducting reference-based assemblies using long reads.
By Jit 2881 days agogithub.com - Rebaler is a program for conducting reference-based assemblies using long reads. It relies mainly on minimap2 for alignment and Racon for making consensus sequences. I made Rebaler for bacterial genomes (specifically for the...CoLoRMap: Correcting Long Reads by Mapping short reads
By Jit 2909 days agogithub.com - Second generation sequencing technologies paved the way to an exceptional increase in the number of sequenced genomes, both prokaryotic and eukaryotic. However, short reads are difficult to assemble and often lead to highly fragmented assemblies....The 8000 years old Tibetian gene mutation !!!
By Neel 4370 days agoA study led by University of Utah scientists is the first to find a genetic cause for the adaptation, a single DNA base pair change that dates back 8,000 years and demonstrate how it contributes to the Tibetans' ability to live in low oxygen...Vital-IT
By Abhi 4251 days agohttp://www.vital-it.ch/ - Vital-IT is a bioinformatics competence center that supports and collaborates with life scientists in Switzerland and beyond. The multi-disciplinary team provides expertise, training and maintains a high-performance computing (HPC) and storage...Sequencing By Xpansion
By Jitendra Narayan 4069 days agoXpandomer in a single drop reaction to sequence an entire human genome 1000X over.
