Jit
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Ra assembler - a de novo DNA assembler for third generation sequencing data
By biogeek 2992 days agogithub.com - Integration of the Ra assembler - a de novo DNA assembler for third generation sequencing data developed on Faculty of Electrical Engineering and Computing (FER), Ruder Boskovic Institute (RBI) and Genome Institute of Singapore (GIS). Ra is in...11th International Joint Conference on Biomedical Engineering Systems and Technologies
BIOSTEC, the 11th International Joint Conference on Biomedical Engineering Systems and Technologies. Registration to BIOINFORMATICS allows free access to all other BIOSTEC conferences. Upcoming Deadlines Regular Paper Submission: July 31,...PhD program in Computer Science at University of Essex
As part of the PhD program in Computer Science at University of Essex, I am looking for a PhD student in computational and synthetic biology. The ideal candidate is interested in designing new biological design automation methods for genome scale...SWALO: Scaffolding with assembly likelihood optimization
By Jit 2818 days agoatifrahman.github.io - SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Please email your questions, comments, suggestions, and bug reports to...MafTools
By Jit 3307 days agogithub.com - maftools - An R package to summarize, analyze and visualize MAF files. Introduction. With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widley accepted and used to store variants detected. The Cancer Genome Atlas Project...MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via...
By Jit 2671 days agogithub.com - MEGAHIT is a single node assembler for large and complex metagenomics NGS reads, such as soil. It makes use of succinct de Bruijn graph (SdBG) to achieve low memory assembly. MEGAHIT can optionally utilize a CUDA-enabled GPU to...Research Associate openings at IASRI, India
Research Associate (RA) Two (2) Ph.D. in Bioinformatics/ Agricultural Statistics/ Statistics/ Computer Science/ Computer Application or equivalent or Master’s in Bioinformatics/ Agricultural Statistics/ Statistics/ Computer Science/ Computer...Krona
By Jit 3273 days agogithub.com - Krona allows hierarchical data to be explored with zooming, multi-layered pie charts. Krona charts can be created using an Excel template or KronaTools, which includes support for several bioinformatics tools and raw data formats. The interactive...NxRepair: error correction in de novo assemblies using Nextera Mate Pair Reads
By BioStar 2600 days agogithub.com - NxRepair is a python module that automatically detects large structural errors in de novo assemblies using Nextera mate pair reads. The decector will break a contig at the site of an identified misassembly and will generate a new fasta file...TMAP - torrent mapping alignment program General Notes
By Poonam Mahapatra 3262 days agogithub.com - TMAP - torrent mapping alignment program General Notes TMAP is a fast and accurate alignment software for short and long nucleotide sequences produced by next-generation sequencing technologies. The latest TMAP is unsupported. To use a...
