Abhimanyu Singh
A bioinformatics beginner
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HECIL: A Hybrid Error Correction Algorithm for Long Reads with Iterative Learning
By Abhimanyu Singh 2838 days agogithub.com - HECIL—Hybrid Error Correction with Iterative Learning—a hybrid error correction framework that determines a correction policy for erroneous long reads, based on optimal combinations of decision weights obtained from short read...HiTE: a fast and accurate dynamic boundary adjustment approach for full-length Transposable...
By LEGE 384 days agogithub.com - HiTE is a Python software that uses a dynamic boundary adjustment approach to detect and annotate full-length Transposable Elements in Genome Assemblies. In comparison to other tools, HiTE demonstrates superior performance in detecting a...ARC: pipeline which facilitates iterative, reference guided de novo assemblies
By Jit 2997 days agoibest.github.io - ARC is a pipeline which facilitates iterative, reference guided de novo assemblies with the intent of: Reducing time in analysis and increasing accuracy of results by only considering those reads which should assemble...SKESA: strategic k-mer extension for scrupulous assemblies
By Jit 2886 days agogithub.com - SKESA is a DeBruijn graph-based de-novo assembler designed for assembling reads of microbial genomes sequenced using Illumina. Comparison with SPAdes and MegaHit shows that SKESA produces assemblies that have high sequence quality and contiguity,...Hawkeye: an interactive visual analytics tool for genome assemblies
By Abhimanyu Singh 2838 days agoamos.sourceforge.net - Genome sequencing remains an inexact science, and genome sequences can contain significant errors if they are not carefully examined. Hawkeye is our new visual analytics tool for genome assemblies, designed to aid in identifying and correcting...CrossMap: program for genome coordinates conversion between different assemblies
By Rahul Nayak 1718 days ago Comments (1)crossmap.sourceforge.net - CrossMap is a program for genome coordinates conversion between different assemblies (such as hg18 (NCBI36) <=> hg19 (GRCh37)). It supports commonly used file formats...Researcher in computer science/biology
Researcher in Computer Science at the Computational Biology Unit - temporary employment The Department of Informatics is a vacant position as a researcher in computer science, related to Computational Biology Unit (CBU), for 3 years. The...3rd Annual Next Generation Sequencing Asia Congress 2013 at Singapore, Singapore
The 3rd Annual Next Generation Sequencing Asia Congress is to be held on the 22nd and 23rd of October 2013 in Singapore. Over the 2 days, the conference will provide an overview of the current options of next-generation sequencing platforms,...Next Generation Sequencing (NGS) Tutorials
By Jitendra Narayan 4794 days ago Comments (31)chagall.med.cornell.edu - Institute of computational biomedicine, Cornell University provide an NGS workshop tutorial at http://chagall.med.cornell.edu/NGScourse/ You can also add your favourite NGS educational material, or workshop tutorial by commenting on this...RA at IISR Kozhikode
INDIAN INSTITUTE OF SPICES RESEARCH (Indian Council of Agricultural Research) Marikunnu P.O., Kozhikode – 673 012, Kerala Walk- in- Test cum Interview (based on test) for the selection of Research Associate under the scheme “Distributed...
