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ContigExtender: a new approach to improving de novo sequence assembly for viral metagenomics data
By LEGE 233 days agogithub.com - ContigExtender, was developed to extend contigs, complementing de novo assembly. ContigExtender employs a novel recursive Overlap Layout Candidates (r-OLC) strategy that explores multiple extending paths to achieve longer and highly accurate...Figeno: Tool for plotting sequencing data along genomic coordinates.
By LEGE 101 days agogithub.com - Tool for plotting sequencing data along genomic coordinates. FIGENO is a FIGure GENerator for GENOmics With figeno, you can plot various types of sequencing data along genomic coordinates. Video...EyeChrom: Visualizing Chromosome Count Data From Plants
By Jit 2180 days agoeyechrom.com - It's goal is to show chromosmal data per genus. Select the genus, and the plot will show the records found for it in the Chromosome Counts Database. note: Report an issue via Gihub: github.com/roszenil/CCDBcurator and...DeepHiC: A Generative Adversarial Network for Enhancing Hi-C Data Resolution
By Rahul Nayak 1760 days agosysomics.com - DeepHiC is a GAN-based model for enhancing Hi-C data resolution. We developed this server for helping researchers to enhance their own low-resolution data by a few steps of clicks. Ab initio training could be performed according to our published...Reference Sequence Resource!
By LEGE 1198 days agowww.encodeproject.org - The ENCODE project uses Reference Genomes from NCBI or UCSC to provide a consistent framework for mapping high-throughput sequencing data. In general, ENCODE data are mapped consistently to 2 human (GRCH38, hg19) and 2 mouse...Which are the best statistical programming languages to study for a bioinformatician?
Started by Jitendra Narayan 4188 days ago Replies (8) Last reply by Rahul Nayak 3500 days agoIn Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages. Matlab had a lot of powerful tools and was easy to use, whereas SPSS is for...Postdoctoral Associate - Bioinformatics at Duke University Medical Center
The Department of Biostatistics and Bioinformatics at Duke University Medical Center is seeking a Postdoctoral Associate for a one year appointment to work on several high-dimensional research projects. The specific goals of the project are to...RNA-Seq Data Pathway and Gene-set Analysis Workflows
By Jit 4081 days agoDescribe the GAGE workflows on RNA-Seq data pathway analysis and gene-set analysis.RStudio
By Jitendra Narayan 3653 days ago Comments (1)http://www.rstudio.com/ - RStudio IDE is a powerful and productive user interface for R. It’s free and open source, and works great on Windows, Mac, and Linux. The developers and expert trainers are the authors of several popular R packages, including ggplot2, plyr,...
