Rahul Nayak
A Bioinformatician
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UPGMA Worked Example
By Abhi 1704 days agowww.slimsuite.unsw.edu.au - The tabs below include a walkthrough of clustering 7 biological sequences (A-G) using the Unweighted Pair-Group Method with Arithmetic mean (UPGMA) method. Note that UPGMA is actually a generic method and thus the walkthrough could apply to any...TMRCA Calculator
By BioStar 1956 days agoclandonaldusa.org - This program calculates the probability that two people have a certain number of generations between them, based on the standard infinite alleles formula of Walsh. It calculates both the probability of being at an exact number of...chromoMap-An R package for Interactive visualization and mapping of human chromosomes
By Rahul Nayak 2910 days ago Comments (1)An R package for Interactive visualization and mapping of human chromosomesInteractive Bioinformatics Resources !
By Jit 1766 days agohttp://sandbox.bio - Learn how to use bioinformatics tools right from your browser.Everything runs in a sandbox, so you can experiment all you want. More at sandbox.bioS-plot2: creates an interactive, two-dimensional heatmap of sequences
By Jit 2815 days agobitbucket.org - S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and dissimilarities in nucleotide usage between genomic sequences (partial or complete). In S-plot2, whole eukaryotic chromosomes and smaller prokaryotic genomes can...dotPlotly: Generate an interactive dot plot from mummer or minimap alignments
By Rahul Nayak 2669 days agogithub.com - Create an interactive dot plot from mummer output OR PAF format R script that makes a plotly interactive and/or static (png/pdf) dot plot. Shiny app available for testingshinyChromosome:a GUI for the interactive creation of non-circular whole genome diagrams
By Jit 2296 days agoyimingyu.shinyapps.io - shinyChromosome is a graphical user interface for interactive creation of non-circular whole genome diagrams developed using the R Shiny package. To create single-genome plot by aligning genome data along all chromosomes of a single genome, go to...Senior Bioinformatics Scientist @ Strand Life Sciences -- Bangalore, India
RESPONSIBILITIES The candidate is expected to work on a variety of projects related to analysis of data from NGS, Mass Spectrometry, Flow Cytometry and other related modalities. The position expects hands-on work and a strong eye for detail. The...Life of a Bioinformatician !
By Jitendra Narayan 29 days agoSomewhere between FASTQ files, volcano plots, and 3 AM coffee… the gene is probably hiding too. #Bioinformatics #Genomics #ResearchLTree illustrating the lack of interchromosomal rearrangement of the microchromosomes.
By BioJoker 2756 days agoTree illustrating the lack of interchromosomal rearrangement of the microchromosomes. No interchromosomal microchromosome fusions from the avian ancestor unless otherwise stated (macrochromosomal fusions not listed). The overall pattern of...
