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By Martin Jones 3666 days agoan R package for analysing ontologies and protein domain annotationsRCircos: an R package for Circos 2D track plots
By Jit 3107 days agobitbucket.org - RCircos package provides a simple and flexible way to make Circos 2D track plots with R and could be easily integrated into other R data processing and graphic manipulation pipelines for presenting large-scale multi-sample genomic research data. It...UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
By BioStar 2124 days agogithub.com - UpSetR generates static UpSet plots. The UpSet technique visualizes set intersections in a matrix layout and introduces aggregates based on groupings and queries. The matrix layout enables the effective representation of associated data,...R Package for PCA Analysis
By LEGE 242 days agorpubs.com - An R package for performing principal component analysis (PCA) of genomics data. The package performs PCA, generates the publication-ready plots, and identifies population-specific outlier individuals. The package can be accessed on...chromoMap-An R package for Interactive visualization and mapping of human chromosomes
By Rahul Nayak 2341 days ago Comments (1)An R package for Interactive visualization and mapping of human chromosomesGeneOverlap: An R package to test and visualize gene overlaps
By Jit 2156 days agobioconductor.org - Overlapping gene lists can reveal biological meanings and may lead to novel hypotheses. For example, histone modification is an important cellular mechanism that can pack and re-pack chromatin. By making the chromatin structure more dense or loose,...GeneMates: an R package for Detecting Horizontal Gene Co-transfer between Bacteria Using Gene-gene...
By Rahul Nayak 1720 days agogithub.com - GeneMates is an R package implementing a network approach to identify horizontal gene co-transfer (HGcoT) between bacteria using whole-genome sequencing (WGS) data. It is particularly useful for investigating intra-species HGcoT, where...ReConPlot: an R package for the visualization and interpretation of genomic rearrangements
By LEGE 343 days agoacademic.oup.com - ReConPlot (REarrangement and COpy Number PLOT), an R package that provides functionalities for the joint visualization of SCNAs and SVs across one or multiple chromosomes. ReConPlot is based on the popular ggplot2 package, thus allowing...Venn Diagrams on R Studio
By Jitendra Prajapati 3132 days ago Comments (2)rstudio-pubs-static.s3.amazonaws.com - First step: Install & load “VennDiagram” package. # install.packages('VennDiagram') library(VennDiagram) Second step: Load data Add filepath if “catdoge.csv” is not in working-directory. d <-...Pacman
By Rahul Nayak 3566 days agoThe pacman package is an R package management tool that combines the functionality of base library related functions into intuitively named functions.
