Jit
Enthusiast computational biologist with business dream !!!
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Genome sequence-based (sub-)species delineation.
By Abhimanyu Singh 2643 days agohttp://ggdc.dsmz.de/ - The GGDC web service reports digital DDH for a universal and accurate delineation of prokaryotic (sub-)species without inheriting the pitfalls of classic DDH, and also calculates differences in genomic G+C...Roary: the Pan Genome Pipeline
By Jit 2602 days ago Comments (1)sanger-pathogens.github.io - Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (produced by Prokka (Seemann, 2014)) and calculates the pan genome. Using a standard desktop PC, it can analyse datasets with thousands of...RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
By BioJoker 2516 days agogithub.com - Alonge M, Soyk S, Ramakrishnan S, Wang X, Goodwin S, Sedlazeck FJ, Lippman ZB, Schatz MC: Fast and accurate reference-guided scaffolding of draft genomes. bioRxiv 2019. RaGOO is a tool for coalescing genome assembly contigs into...De novo Genome Assembly for Illumina Data
By Rahul Nayak 2239 days agowww.melbournebioinformatics.org.au - Written and maintained by Simon Gladman - Melbourne Bioinformatics (formerly VLSCI) Protocol Overview / Introduction In this protocol we discuss and outline the process of de novo assembly for small to medium sized...Genobuntu: Package for Next Generation Sequencing and Genome Assembly
By BioStar 2119 days agosourceforge.net - Genobuntu is a software package containing more than 70 software and packages oriented towards NGS. In its current version, Genobuntu supports pre assembly tools, genome assemblers as well as post assembly tools.Commonly used biological software and...Protocol for De novo Genome Assembly using Illumina Reads
By BioStar 1876 days agoIn this protocol, we address and describe the de novo assembly method for small to medium-sized genomes.Genome Assembly Workshop 2020
By Jit 1656 days agoucdavis-bioinformatics-training.github.io - Our team offers custom bioinformatics services to academic and private organizations. We have a strong academic background with a focus on cutting edge, open source software. We replicate standard analysis pipelines (best practices) when...Vicoso group
The Vicoso group investigates how sex chromosomes evolve over time, and what biological forces are driving their patterns of differentiation. The Vicoso group is interested in understanding several aspects of the biology of sex chromosomes, and...HIV genome database !
By Rahul Nayak 1507 days agowww.hiv.lanl.gov - HIV resources https://www.hiv.lanl.gov/components/sequence/HIV/search/search.htmlEnvironmental Genomics Group SciLifeLab/KTH Stockholm
By BioStar 1193 days agohttps://github.com/envgen - Useful Metagenomics resources
