Poonam Mahapatra
Bioinformatics Researcher
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List of motif discovery tools !
By Neel 2754 days ago Comments (2)A DNA sequence motif represented as a sequence logo for the LexA-binding motif. I
List of Bioinformatics Software Tools for Next Generation Sequencing
Last updated 3670 days ago by JitCommercial tools Strand NGS offers many different tools including alignment, RNA-Seq, DNA-Seq, ChIP-Seq, Small RNA-Seq, Genome Browser, visualizations, Biological Interpretation, etc. Supports workflows “one can import the sample data in...-
Tools for Searching Repeats And Palindromic Sequences
Last updated 2972 days ago by Poonam Mahapatra Comments (2)What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociation Kinetics Experiments, and C-Value Paradox ). These sequences were later... Software for genome assembly !
By LEGE 2105 days agoList of bioinformatics tools/Software Website References for genome assembly:molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
By BioJoker 2693 days agowww.molinspiration.com - Molinspiration offers broad range of cheminformatics software tools supporting molecule manipulation and processing, including SMILES and SDfile conversion, normalization of molecules, generation of tautomers, molecule fragmentation,...Troyanskaya Lab
The goal of our research is to interpret and distill this complexity through accurate analysis and modeling of molecular pathways, particularly those in which malfunctions lead to the manifestation of disease. We are inventing integrative methods...JPred4: A Protein Secondary Structure Prediction Server
By Poonam Mahapatra 3080 days agowww.compbio.dundee.ac.uk - JPred4 (http://www.compbio.dundee.ac.uk/jpred4) is the latest version of the popular JPred protein secondary structure prediction server which provides predictions by the JNet algorithm, one of the most accurate methods for secondary structure...List of popular bioinformatics software/tools
By Jitendra Narayan 4707 days ago Comments (28)samtools.sourceforge.net - In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.Software developed in pevsner lab
By Robert M Willioms 4260 days agopevsnerlab.kennedykrieger.org - DRAGON: Database Referencing of Array Genes Online SNOMAD: Standardization and Normalization of Microarray Data SNPduo: SNP Analysis Between Two Individuals SNPtrio: Analyzing and Visualizing and Inheritance Patterns in Trios SNPscan: Data...EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
By Rahul Nayak 2950 days agoarthropods.eugenes.org - EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction for Eukaryotes", to construct high quality, accurate gene sets for animals and plants, developed by Don Gilbert at Indiana University,...
