Rahul Nayak
A Bioinformatician
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proActiv: Estimation of Promoter Activity from RNA-Seq data
By BioStar 2033 days agogithub.com - proActiv is an R package that estimates promoter activity from RNA-Seq data. proActiv uses aligned reads and genome annotations as input, and provides absolute and relative promoter activity as output. The package can be used to identify active...3D Genome Browser: explore chromatin interaction data, such as Hi-C, ChIA-PET, Capture Hi-C,...
By BioStar 1870 days ago3dgenome.fsm.northwestern.edu - Beside visualizing chromatin interaction data, you can also seamlessly browse other omics data such as ChIP-Seq or RNA-Seq for the same genomic region, and gain a complete view of both regulatory landscape and 3D genome structure for any given gene....Refseq viraal genome sequences !
By Jit 1548 days agoftp.ncbi.nlm.nih.gov - List of all viruses on NCBI https://ftp.ncbi.nlm.nih.gov/refseq/release/viral/ContigExtender: a new approach to improving de novo sequence assembly for viral metagenomics data
By LEGE 669 days agogithub.com - ContigExtender, was developed to extend contigs, complementing de novo assembly. ContigExtender employs a novel recursive Overlap Layout Candidates (r-OLC) strategy that explores multiple extending paths to achieve longer and highly accurate...Powerful books for learning data analysis with R
By LEGE 649 days agohttps://r-graphics.org/ - R is powerful tool for data analysis, visualization, and machine learning. And it costs $0 to use! Here are six FREE books you can use to learn R...Figeno: Tool for plotting sequencing data along genomic coordinates.
By LEGE 537 days agogithub.com - Tool for plotting sequencing data along genomic coordinates. FIGENO is a FIGure GENerator for GENOmics With figeno, you can plot various types of sequencing data along genomic coordinates. Video...
Import R Data
Last updated 3161 days ago by Abhimanyu SinghIt is often necessary to import sample textbook data into R before you start working on your homework. Excel File Quite frequently, the sample data is in Excel format, and needs to be imported into R prior to use. For this, we can...NCBI to assist in Virus Hunting Data Science Hackathon
By BioStar 2669 days agoNCBI Hackathon are pleased to announce the second installment of the SoCal Bioinformatics Hackathon. From January 9-11, 2019, the NCBI will help run a bioinformatics hackathon in Southern California hosted by the Computational Sciences Research...De novo Genome Assembly for Illumina Data
By Rahul Nayak 2239 days agowww.melbournebioinformatics.org.au - Written and maintained by Simon Gladman - Melbourne Bioinformatics (formerly VLSCI) Protocol Overview / Introduction In this protocol we discuss and outline the process of de novo assembly for small to medium sized...BioJupies: Automatically Generates RNA-seq Data Analysis Notebooks
By Rahul Nayak 1903 days agoamp.pharm.mssm.edu - With BioJupies you can produce in seconds a customized, reusable, and interactive report from your own raw or processed RNA-seq data through a simple user interface BioJupies now supports user accounts! Sign in from the top right corner of the page...
