Rahul Nayak
A Bioinformatician
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RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
By Jit 2552 days agokiwi.cs.dal.ca - RITA is a standalone software package and Web server for taxonomic assignment of metagenomic sequence reads. By combining homology predictions from BLAST or UBLAST with compositional classifications from a Naive Bayes classifier, RITA is able to...BioCircos.js is an open source interactive Javascript library to interactive display biological...
By Jit 2499 days agobioinfo.ibp.ac.cn - BioCircos.js is an open source interactive Javascript library which provides an easy way to interactive display biological data on the web. It implements a raster-based SVG visualization using the open source Javascript...Epiviz: an interactive visualization tool for functional genomics data.
By Jit 2328 days agohttps://epiviz.github.io/ - Epiviz is an interactive visualization tool for functional genomics data. It supports genome navigation like other genome browsers, but allows multiple visualizations of data within genomic regions using scatterplots, heatmaps and other...EXCAVATOR: detecting copy number variants from whole-exome sequencing data
By Radha Agarkar 2149 days agosourceforge.net - EXCAVATOR, for the detection of copy number variants (CNVs) from whole-exome sequencing data. EXCAVATOR combines a three-step normalization procedure with a novel heterogeneous hidden Markov model algorithm and a calling method that classifies...Trelliscope: flexibly visualize large, complex data in great detail from within the R statistical...
By Jit 1767 days agodeltarho.org - Trelliscope provides a way to flexibly visualize large, complex data in great detail from within the R statistical programming environment. Trelliscope is a component in the DeltaRho environment. For those familiar with Trellis...Submit your SARS-CoV-2 sequence data to GenBank
By Neel 1688 days agoSubmit your SARS-CoV-2 sequence data to GenBank and SRA with our new submission landing page.McClintock: Meta-pipeline to identify transposable element insertions using next generation...
By BioStar 1488 days agogithub.com - an integrated bioinformatics pipeline for the detection of TE insertions in whole-genome shotgun data, called McClintock (https://github.com/bergmanlab/mcclintock), which automatically runs and standardizes output for multiple TE detection methods....GraphUnzip: Phases an assembly graph using Hi-C data and/or long reads.
By Jit 1386 days agogithub.com - GraphUnzip, a fast, memory-efficient and accurate tool to unzip assembly graphs into their constituent haplotypes using long reads and/or Hi-C data. As GraphUnzip only connects sequences in the assembly graph that already had a potential link based...Corona Virus Genome and Data Download !
By Abhi 1076 days agowww.ncbi.nlm.nih.gov - Genes and its related metadata could be found on https://www.ncbi.nlm.nih.gov/datasets/coronavirus/genomes/Orange: Data mining
By BioStar 620 days agoorangedatamining.com - Open source machine learning and data visualization. Build data analysis workflows visually, with a large, diverse toolbox.
