Poonam Mahapatra
Bioinformatics Researcher
Our Sponsors
Related items
R Package for PCA Analysis
By LEGE 274 days agorpubs.com - An R package for performing principal component analysis (PCA) of genomics data. The package performs PCA, generates the publication-ready plots, and identifies population-specific outlier individuals. The package can be accessed on...chromoMap-An R package for Interactive visualization and mapping of human chromosomes
By Rahul Nayak 2373 days ago Comments (1)An R package for Interactive visualization and mapping of human chromosomesGeneOverlap: An R package to test and visualize gene overlaps
By Jit 2188 days agobioconductor.org - Overlapping gene lists can reveal biological meanings and may lead to novel hypotheses. For example, histone modification is an important cellular mechanism that can pack and re-pack chromatin. By making the chromatin structure more dense or loose,...modelStudio: a package automates the explanation of machine learning predictive models
By Jit 1796 days agomodeloriented.github.io - The modelStudio package automates the explanation of machine learning predictive models. This package generates advanced interactive and animated model explanations in the form of a serverless HTML site. It...PheWAS: R package is designed to provide an accessible interface to the phenome wide association...
By BioStar 1607 days agogithub.com - The PheWAS R package is designed to provide an accessible interface to the phenome wide association study. For a description of the methods available and some simple examples, please see the package vignette or the R documentation. For...The Snakemake Wrappers repository
By BioStar 1222 days agosnakemake-wrappers.readthedocs.io - The Snakemake Wrapper Repository is a collection of reusable wrappers that allow to quickly use popular tools from Snakemake rules and workflows. More at https://github.com/snakemake/snakemake-wrappersLSC: Improving PacBio Long Read Accuracy by Short Read Alignment
By Abhimanyu Singh 2300 days agowww.healthcare.uiowa.edu - Added Command line argument support. Multi-stage execution modes. Support for parallelization. Now execution proceeds in batches of long reads the size of which can be set by --long_read_batch_size N. Better compressed intermediate files. Added...GenomeMapper: Simultaneous alignment of short reads against multiple genomes
By Jit 2404 days ago1001genomes.org - GenomeMapper is a short read mapping tool designed for accurate read alignments. It quickly aligns millions of reads either with ungapped or gapped alignments. It can be used to align against multiple genomes simulanteously or against a single...CoLoRMap: Correcting Long Reads by Mapping short reads
By Jit 2317 days agogithub.com - Second generation sequencing technologies paved the way to an exceptional increase in the number of sequenced genomes, both prokaryotic and eukaryotic. However, short reads are difficult to assemble and often lead to highly fragmented assemblies....QuasR: Quantification and annotation of short reads in R
By Neel 1228 days agowww.bioconductor.org - The QuasR package (short for Quantify and annotate short reads in R) integrates the functionality of several R packages (such as IRanges (Lawrence et al. 2013) and Rsamtools) and external software (e.g. bowtie, through the Rbowtie package, and...
