Surabhi Chaudhary
A Bioinformatician
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Basics of BLAST Programs !
By BioStar 119 days agoThe Basic Local Alignment Search Tool (BLAST) is a powerful bioinformatics program used to compare an input sequence (such as DNA, RNA, or protein sequences) against a database of sequences to find regions of similarity.Generate interactive codon usage plots
By Jit 2459 days agogithub.com - Generate interactive codon usage plots as used at ensembl.lepbase.org. The input file format can be generated from an Ensembl database using the export_json.pl script from the easy-import pipeline. live demo
analyzing codon usage
By Neel 1842 days agoperl script analyzing codon usage in an input sequence to evaluate how efficiently it will be expressed in Anopheles gambiae. The input codon usage table derived from highly‐expressed A. gambiae genes is appended below.dcGOR
By Martin Jones 3667 days agoan R package for analysing ontologies and protein domain annotationsOrthoANI: An improved algorithm and software for calculating average nucleotide identity
By Abhimanyu Singh 2172 days agowww.ezbiocloud.net - OAT uses OrthoANI to measure the overall similarity between two genome sequences. ANI and OrthoANI are comparable algorithms: they share the same species demarcation cut-off at 95~96% and large comparison studies have demonstrated both algorithms to...CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R
By Shruti Paniwala 1472 days agogitlab.gwdg.de - CRBHits is a coding sequence (CDS) analysis pipeline in R (R Core Team, 2019). It reimplements the Conditional Reciprocal Best Hit (CRBH) algorithm crb-blast and covers all necessary steps from sequence similarity searches, codon alignments to Ka/Ks...PHD SCHOLARSHIP DENMARK
ne PhD position is available at the Bioinformatics Center, Department of Biology, University of Copenhagen, Denmark. The PhD position concerns protein structure prediction, and will be in the Structural Bioinformatics group of Associate professor...STRUM: structure-based prediction of protein stability changes upon single-point mutation
By BioStar 2265 days agozhanglab.ccmb.med.umich.edu - STRUM is a method for predicting the fold stability change (ΔΔG) of protein molecules upon single-point nsSNP mutations. STRUM adopts a gradient boosting regression approch to train the Gibbs free-energy changes on a variety of features...PhD student / Bio-informatician in computational protein modeling
PhD student / Bio-informatician in computational protein modeling Job Profile You will perform research on drug/protein interaction analysis in the context of lung cancer, using computational protein modeling. You will implement existing models...An entire genome written in lab
By Rahul Nayak 4046 days agoResearchers rewrite an entire genome — and add a healthy twist
