Poonam Mahapatra
Bioinformatics Researcher
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HECIL: A Hybrid Error Correction Algorithm for Long Reads with Iterative Learning
By Abhimanyu Singh 2289 days agogithub.com - HECIL—Hybrid Error Correction with Iterative Learning—a hybrid error correction framework that determines a correction policy for erroneous long reads, based on optimal combinations of decision weights obtained from short read...Janggu - Deep learning for Genomics
By Jit 1477 days agogithub.com - Janggu is a python package that facilitates deep learning in the context of genomics. The package is freely available under a GPL-3.0 license. Detail tutorial at https://janggu.readthedocs.io/en/latest/ USE...A guide to machine learning for biologists
By LEGE 1301 days agowww.nature.com - We aim to provide readers with a gentle introduction to a few key machine learning techniques, including the most recently developed and widely used techniques involving deep neural networks. We describe how different techniques may be suited to...
List of In-silico Binding Site Prediction Tools
Last updated 4082 days ago by Shikha LogwaniFollowing are the list of In-silico Binding Site Prediction in Proteins tools CASTp : http://sts.bioengr.uic.edu/castp/ Computed Atlas of Surface Topography of proteins (CASTp) provides an online resource for locating, delineating and...Protein Subcellular Localization Prediction
By Poonam Mahapatra 2595 days agoabi.inf.uni-tuebingen.de - Assigning subcellular localization to a protein is an important step towards elucidating its interaction partners, function, and potential role(s) in the cellular machinery. Computational tools offer an attractive complement to time-consuming and...Reference-free prediction of rearrangement breakpoint reads
By Neel 2588 days agocode.google.com - lideSort-BPR ( b reak p oint r eads) is based on a fast algorithm for all-against-all comparisons of short reads and theoretical analyses of the number of neighboring reads. When applied to a dataset with a sequencing...LUMPY
By Shruti Paniwala 3148 days agogithub.com - A probabilistic framework for structural variant discovery. Ryan M Layer, Colby Chiang, Aaron R Quinlan, and Ira M Hall. 2014. "LUMPY: a Probabilistic Framework for Structural Variant Discovery." Genome Biology 15 (6):...GMOL: An Interactive Tool for 3D Genome Structure Visualization
By Jit 2575 days agowww.nature.com - GMOL was developed based upon our multi-scale approach that allows a user to scale between six separate levels within the genome. With GMOL, a user can choose any unit at any scale and scale it up or down to visualize its structure and retrieve...CONTIGuator !
By BioStar 2013 days agosourceforge.net - CONTIGuator is a Python script for Linux environments whose purpose is to speed-up the bacterial genome assembly process and to obtain a first insight of the genome structure using the well-known artemis comparison tool (ACT).Webinar: Wednesday 21 August 2013 at Noon EDT
By Jitendra Narayan 4258 days agoSelective Sequencing Through Combinatorial Pooling
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