Rahul Nayak
A Bioinformatician
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Hapsembler: An Assembler for Highly Polymorphic Genomes
By Jit 2377 days agocompbio.cs.toronto.edu - Hapsembler is a haplotype-specific genome assembly toolkit that is designed for genomes that are rich in SNPs and other types of polymorphism. Hapsembler can be used to assemble reads from a variety of platforms including Illumina and Roche/454....GRAbB: Selective Assembly of Genomic Regions, a New Niche for Genomic Research
By Rahul Nayak 2127 days agogithub.com - GRAbB is shown to be more efficient than MITObim in terms of speed, memory and disk usage. The other functionalities (handling multiple targets simultaneously and extracting homologous regions) of the new program are not matched by other programs....Senior Bioinformatician (Assembly) Moore Aquatic Symbiosis Project Tree of Life
You will have some previous experience with genome bioinformatics or other large scale scientific data analysis, or a newly qualified graduate student with data science skills interested in DNA sequence data. While desirable, previous experience...NCBI Datasets pages
By BioStar 500 days agoAssembly and Genome record pages now redirect to new NCBI Datasets pages.HDOCK SERVER
By Neel 1621 days agohdock.phys.hust.edu.cn - HDOCK SERVER Protein-protein and protein-DNA/RNA docking based on a hybrid algorithm of template-based modeling and ab initio free docking. The HDOCK server distinguishes itself from similar docking servers in its ability to support...COSINE: non-seeding method for mapping long noisy sequences
By Jit 2220 days agogithub.com - Third generation sequencing (TGS) are highly promising technologies but the long and noisy reads from TGS are difficult to align using existing algorithms. Here, we present COSINE, a conceptually new method designed specifically for aligning long...TULIP - The Uncorrected Long read Itegration Pipeline
By Jit 2557 days agogithub.com - #Running TULIP (The Uncorrected Long-read Integration Process), version 0.4 late 2016 (European eel) TULIP currently consists of to Perl scripts, tulipseed.perl and tulipbulb.perl. These are very much intended as prototypes, and additional...GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
By Rahul Agarwal 3428 days ago Comments (1)github.com - GraphMap is a novel mapper targeted at aligning long, error-prone third-generation sequencing data.It is designed to handle Oxford Nanopore MinION 1d and 2d reads with very high sensitivity and accuracy, and also presents a significant...Bioinformatics tools developed for Oxford Nanopore data analysis !
By biogeek 2522 days ago Comments (2)One of the technical advantages of ONT data is the read length, which offers great prospects for genome assembly.
