Jit
Enthusiast computational biologist with business dream !!!
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1mb long DNA with Nanopore technology
By Jit 3003 days agoLongest read of 1mb achievements with NanoporeResearch Associate Bioinformatician @ University of Bristol
This 0.5 fte role will have specific responsibility for the bioinformatic side of a Health Innovation Challenged Fund (HICF) research project investigating the application of Next Generation Sequencing (NGS) technologies to the analysis of Minimal...NanoPack: visualizing and processing long-read sequencing data
By Jit 2632 days agogithub.com - The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with links to separate scripts and their documentation. The scripts are compatible...RA Bioinformatics at IISR
Bioinformatics Research Associate at Indian Institute of Spice Research Pay Scale: Rs. 40,000/-per month +HRA (as admissible) for Ph.D. holders and Rs. 38,000/-p.m. + HRA (as admissible) for Master degree holder Qualifications: a)Essential...Kevler: Reference-free variant discovery in large eukaryotic genomes
By Jit 2234 days agogithub.com - Welcome to kevlar, software for predicting de novo genetic variants without mapping reads to a reference genome! kevlar's k-mer abundance based method calls single nucleotide variants (SNVs), multinucleotide variants (MNVs),...Bioinformatics Project Assistant at Vector Control Research Centre (VCRC), Puducherry.
Applications are invited upto 27.07.2015 for filling up of one post of Project Assistant (UNRESERVED) to work under ICMR funded Non-Institutional adhoc project entitled “Biomedical Informatics centre’s of ICMR” at Vector Control Research Centre...GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
By Jit 3199 days agogithub.com - GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.htmlFeatures Mapping position agnostic to alignment parameters. ...Bioinformatics Scientist at NIN
No.NIN/PERS/Sch-88/2015-16/ WALK-IN-INTERVIEW (EMPLOYMENT NOTIFICATION) Eligible candidates are invited to apply for the following post on the ad hoc research project entitled “Biomedical Informatics Centre’s of ICMR” - funded by ICMR at this...
Run miniasm assembler on nanopore reads !
Last updated 3005 days ago by Jit Comments (5)Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream...Five key traits to seek out in potential bioinformatics candidates !!!
By Jit 3865 days agoOnce your research group is ready to make a larger investment and hire a bioinformatician to gain a competitive edge, there are several key traits to seek out in potential candidates. The best bioinformatician are:-
