Jit
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ALPACA: A hybrid strategy for assembly of genomic DNA shotgun sequencing reads.
By Seema Singh 2870 days agogithub.com - ALPACA requires Celera Assembler 8.3 or later. It is recommended to build Celera Assembler from source. (Why? The pre-built binaries CA_8.3rc1 and CA8.3rc2 will work for any large data set. Detail paper...Bioinformatics openings at JNU
School of Biotechnology JAWAHARLAL NEHRU UNIVERSITY NEW DELHI Jawaharlal Nehru University has been granted funds by the Department of Biotechnology (DBT), Govt. of India to initiate an Inter-School programme in JNU to strengthen training and...
Frequent Paired-end reads (PE 2x100) mapping command lines
Last updated 2855 days ago by Jitbowtie2 -x hs37m -X 650 -q -1 r1.fq -2 r2.fq -S r12.bowtie2.sam bwa aln hs37m.fa r1.fq > r1.sai && bwa aln hs37m.fa r2.fq > r2.sai \ && bwa sampe hs37m r1.sai r2.sai r1.fq r2.fq > r12.bwa.sam bwa bwasw...ICAR project RA position @ Institute of Bioinformatics (IOB) Bangalore
Applications are invited for the post of Research Associate (RA) in the ICAR project on "Lactation stress associated postpartum anestrus SNP array in buffaloes". We are looking for a motivated candidate for handling Next Generation sequencing data...Cerulean: A hybrid assembly using high throughput short and long reads
By Rahul Nayak 2834 days agosourceforge.net - Cerulean extends contigs assembled using short read datasets like Illumina paired-end reads using long reads like PacBio RS long reads. Cerulean v0.1 has been implemented with bacterial genomes in mind. The method is fully described in...Postdoctoral Fellowship at Department of Psychiatry, Warneford Hospital, Oxford
Applications are invited for a postdoctoral research assistant to work in the Translational Neuroscience and Dementia Research Group (TNDRG) on a project using informatics approaches to understand and prevent dementia, specifically on the role of...FinisherSC:a repeat-aware tool for upgrading de novo assembly using long reads
By Jit 2758 days agogithub.com - Here is the command to run the tool: python finisherSC.py destinedFolder mummerPath If you are running on server computer and would like to use multiple threads, then the following commands can generate 20 threads to run FinisherSC. python...Walk-in-interview for SRF, JRF posts at Junagadh Agricultural University
Job Description: Walk-in-interview for SRF, JRF posts at Junagadh Agricultural University Junagadh Agricultural University has given a recruitment notification to fill the posts of Senior, Junior Research Fellows in the establishment. Name...LRCstats: a tool for evaluating long reads correction methods
By Aaryan Lokwani 2756 days agogithub.com - LRCstats is an open-source pipeline for benchmarking DNA long read correction algorithms for long reads outputted by third generation sequencing technology such as machines produced by Pacific Biosciences. The reads produced by third generation...Project Fellow at Indian Institute of Chemical Biology (IICB)
Advertisement No. : R&C/CD/427/2015 ,Vacancy Code: 4271501 Project Fellow Bioinformatics recruitment in Indian Institute of Chemical Biology (IICB) purely temporary Name of the Project: "Genomics and Informatics Solutions for...
