Jit
Enthusiast computational biologist with business dream !!!
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Applied Statistics for Bioinformatics using R
By Neel 2278 days agoThe purpose of this book is to give an introduction into statistics in order to solve some problems of bioinformatics. Statistics provides procedures to explore and visualize data as well as to test biological hypotheses. The book intends to be...GeneOverlap: An R package to test and visualize gene overlaps
By Jit 2158 days agobioconductor.org - Overlapping gene lists can reveal biological meanings and may lead to novel hypotheses. For example, histone modification is an important cellular mechanism that can pack and re-pack chromatin. By making the chromatin structure more dense or loose,...chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
By Jit 1905 days ago Comments (1)cran.r-project.org - chromoMap provides interactive, configurable and elegant graphics visualization of chromosomes or chromosomal regions allowing users to map chromosome elements (like genes,SNPs etc.) on the chromosome plot.Each chromosome is composed of...Github replacement !
By Rahul Nayak 1886 days agoGitLab as a replacement for for both GitHub and various continuous integration systemsPANEV: an R package for a pathway-based network visualization
By Jit 1749 days agogithub.com - PANEV (PAthway NEtwork Visualizer) is an R package set for gene/pathway-based network visualization. Based on information available on KEGG, it visualizes genes within a network of multiple levels (from 1 to n) of interconnected upstream and...QuasR: Quantification and annotation of short reads in R
By Neel 1199 days agowww.bioconductor.org - The QuasR package (short for Quantify and annotate short reads in R) integrates the functionality of several R packages (such as IRanges (Lawrence et al. 2013) and Rsamtools) and external software (e.g. bowtie, through the Rbowtie package, and...ReConPlot: an R package for the visualization and interpretation of genomic rearrangements
By LEGE 345 days agoacademic.oup.com - ReConPlot (REarrangement and COpy Number PLOT), an R package that provides functionalities for the joint visualization of SCNAs and SVs across one or multiple chromosomes. ReConPlot is based on the popular ggplot2 package, thus allowing...NCBI PSI-BLAST Tutorial
By Jitendra Narayan 4111 days agohttp:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are...NovelSeq: Novel Sequence Insertion Detection
By Neel 2725 days agonovelseq.sourceforge.net - The NovelSeq framework is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. http://novelseq.sourceforge.net/Home Paper at https://www.ncbi.nlm.nih.gov/pubmed/20385726
