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Choosing the Right NGS Sequencing Instrument for Your Study
By Neel 1575 days agogenohub.com - The right sequencing instrument for your study depends on your project goal. Setting aside turnaround time and price, it essentially comes down to the numbers of reads and read length you need for your experiment. Below, we've described and compared...Common steps for reads mapping !
By BioStar 1307 days agoMapping reads to a reference genome is an essential step in many types of genomic analysis, such as variant calling and gene expression analysis.Pacasus: Correction of palindromes in long reads from PacBio and Nanopore
By BioStar 2885 days agogithub.com - Tool for detecting and cleaning PacBio / Nanopore long reads after whole genome amplification. Check the poster from the Revolutionizing Next-Generation Sequencing (2nd edition) conference in the source...Kevler: Reference-free variant discovery in large eukaryotic genomes
By Jit 2443 days agogithub.com - Welcome to kevlar, software for predicting de novo genetic variants without mapping reads to a reference genome! kevlar's k-mer abundance based method calls single nucleotide variants (SNVs), multinucleotide variants (MNVs),...Pacman
By Rahul Nayak 4250 days agoThe pacman package is an R package management tool that combines the functionality of base library related functions into intuitively named functions.progressiveCactus
By Abhimanyu Singh 3428 days agogithub.com - Progressive Cactus is a whole-genome alignment package. Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules https://github.com/glennhickey/progressiveCactusR Package for PCA Analysis
By LEGE 926 days agorpubs.com - An R package for performing principal component analysis (PCA) of genomics data. The package performs PCA, generates the publication-ready plots, and identifies population-specific outlier individuals. The package can be accessed on...scikit-bio™ is an open-source, BSD-licensed, python package providing data structures, algorithms,...
By Jit 3140 days agohttp://scikit-bio.org/ - scikit-bio is currently in beta. We are very actively developing it, and backward-incompatible interface changes can and will arise. To avoid these types of changes being a surprise to our users, our public APIs are decorated to make it clear...GeneOverlap: An R package to test and visualize gene overlaps
By Jit 2840 days agobioconductor.org - Overlapping gene lists can reveal biological meanings and may lead to novel hypotheses. For example, histone modification is an important cellular mechanism that can pack and re-pack chromatin. By making the chromatin structure more dense or loose,...
