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SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
By Abhimanyu Singh 2792 days agoufmg-simba.sourceforge.net - SIMBA, SImple Manager for Bacterial Assemblies, is a Web interface for managing assembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacterial genomes sequenced with NextGeneration Sequencing (NGS)...List of cancer genomics research web resources !
By biogeek 2573 days agoMajor web resources for cancer genomics researchVCFtools: perform common tasks with VCF files such as file validation, file merging, intersecting,...
By Rahul Nayak 2350 days agovcftools.sourceforge.net - VCFtools contains a Perl API (Vcf.pm) and a number of Perl scripts that can be used to perform common tasks with VCF files such as file validation, file merging, intersecting, complements, etc. The Perl tools support all versions of the VCF...Code Golf
By Abhi 1195 days agohttps://code.golf/ - Code Golf is a game designed to let you show off your code-fu by solving problems in the least number of characters. Since this is your first time here, I suggest starting with something simple like Fizz Buzz.scikit-bio™ is an open-source, BSD-licensed, python package providing data structures, algorithms,...
By Jit 2509 days agohttp://scikit-bio.org/ - scikit-bio is currently in beta. We are very actively developing it, and backward-incompatible interface changes can and will arise. To avoid these types of changes being a surprise to our users, our public APIs are decorated to make it clear...modelStudio: a package automates the explanation of machine learning predictive models
By Jit 1817 days agomodeloriented.github.io - The modelStudio package automates the explanation of machine learning predictive models. This package generates advanced interactive and animated model explanations in the form of a serverless HTML site. It...DnaSP: DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms
By Neel 1509 days agohttp://www.ub.edu/dnasp/ - DnaSP, DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms using data from a single locus (a multiple sequence aligned -MSA data), or from several loci (a Multiple-MSA data, such as formats generated by some...R package for visualising GO enrichment
By Jit 4192 days agoR package for visualising GO enrichment results as wordclouds is available at CRANUpcoming R Webinar
By Jitendra Narayan 4141 days agoUpcoming Webinar: Fast Semi-Parallel Linear and Logistic Regression for Genome-Wide Association Studies
Next generation sequencing in R or bioconductor environment
Last updated 3877 days ago by John Parker Comments (3)There are many R software and bioconductor packages for NGS data analysis, some of them are as follows Biostrings The Biostrings package from Bioconductor provides an advanced environment for efficient sequence management and analysis in R. It...
