Poonam Mahapatra
Bioinformatics Researcher
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Scripts for the analysis of HGT in genome sequence data.
By Jit 2580 days agogithub.com - Scripts for the analysis of HGT in genome sequence dataBio7: an integrated development environment for ecological modeling, scientific image analysis and...
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By LEGE 8 days agoThe choice of visualization can significantly impact the insights gained from bioinformatics data. By selecting plots tailored to your data type and analysis goals, you can effectively communicate your findings and make your research more impactful....vt: a variant tool set that discovers short variants from Next Generation Sequencing data.
By Jit 1790 days agogenome.sph.umich.edu - vt is a variant tool set that discovers short variants from Next Generation Sequencing data. https://genome.sph.umich.edu/wiki/Vt https://github.com/atks/vt
Libraries or management tools for high throughput sequencing data
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By BioStar 1518 days agogithub.com - an integrated bioinformatics pipeline for the detection of TE insertions in whole-genome shotgun data, called McClintock (https://github.com/bergmanlab/mcclintock), which automatically runs and standardizes output for multiple TE detection methods....lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data
By BioJoker 2217 days agogithub.com - lordFAST is a sensitive tool for mapping long reads with high error rates. lordFAST is specially designed for aligning reads from PacBio sequencing technology but provides the user the ability to change alignment parameters depending on the reads...You and your friend have similar DNA !!!
By Jit 3801 days agoYour friends may be as genetically similar to you as your fourth cousin ...AccNET
By Jitendra Narayan 2998 days agosourceforge.net - AccNET is a Perl application that presents a new way to study the accessory genome of a given set of organisms. Using the proteomes of these organisms, AccNET create a bipartite network compatible with common network analysis platforms. AccNET...
