Rahul Nayak
A Bioinformatician
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Machine Learning for Genomics
By Jit 1171 days agogithub.com - Module 1: Statistics for genomics (2-8 August 2021) A simple intro to statistical distributions hypothesis testing linear...Machine learning in Perl
By Jit 1742 days agoblogs.perl.org - this is a fourth blog post in the Machine learning in Perl series, focusing on the AI::MXNet, a Perl interface to Apache MXNet, a modern and powerful machine learning library. If you're interested in refreshing your memory or just new to the...CrowdGO: Machine learning and semantic similarity guided consensus Gene Ontology annotation
By Shruti Paniwala 912 days agogitlab.com - CrowdGO is a protein Gene Ontology predictor using a meta approach, analyzing the predictions of other tools in order to get an improved precision and recall. Please note that the CrowdGO snakemake workflow is currently only tested on Ubuntu. It...Bioinformatics Protocols
By Rahul Nayak 3855 days agogenome.edu.au - RNA Seq Basic Galaxy Tutorial RNA-Seq tutorial based on Trapnell et al. (2012) Nature Protocols In this tutorial we cover the concepts of RNA-Seq differential gene expression (DGE) analysis using a very small synthetic dataset from a well...Bioinformatics algorithms tutorials
By John Parker 3805 days agowww.homolog.us - Useful bioinformatics tutorial, such as De Bruijn Graphs for NGS AssemblyAlgorithms for PacBio ReadsSoftware and Hardware Concepts for BioinformaticsFinding us in Homolog.us (Search Algorithms)NGS Genome and RNAseq Assembly - a Hands on...
A guide for complete R beginners :- R Syntax
Last updated 3560 days ago by Archana MalhotraR is a functional based language, the inputs to a function, including options, are in brackets. Note that all dat and options are separated by a comma Function(data, options) Even quit is a function q() So is...Genome Browser : GBrowse
By Jit 3200 days agoelp.ucdavis.edu - Generic Genome Browser Version 2: A Tutorial for Administrators This is an extensive tutorial to take you through the main features and gotchas of configuring GBrowse as a server. This tutorial assumes that you have successfully set up Perl, GD,...HOMER: Software for motif discovery and next-gen sequencing analysis
By Neel 3133 days agohomer.salk.edu - This tutorial covers topics independently of HOMER, and represents knowledge which is important to know before diving head first into more advanced analysis tools such as HOMER. Setting up your computing environment Retrieving and storing...GATB : Genome Analysis Toolbox with de-Bruijn graph
By Jit 3131 days agohttps://gatb.inria.fr/ - The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge...
