Jit
Enthusiast computational biologist with business dream !!!
Our Sponsors
Related items
598 Indian Genomes from 55 ethnic groups Sequenced
By Jit 1807 days agoThis study reports sequence from 1,267 individuals that includes 598 individuals representing 55 ethnic groups that span the major language groups across India.1000 Genomes Chile Project
By LEGE 108 days agohttps://1000genomas.cl/ - Welcome to Chile Sequence to Chile: A Genomic Exploration Project for the Future Genomics, the science that deciphers the complexity of DNA, immerses us in the world of life at its most basic level. On this journey into the depths of genetic...Unicycler: Hybrid assembly pipeline for bacterial genomes
By Jit 2571 days agogithub.com - Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs...Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
By Jit 2531 days agosourceforge.net - Meraculous is a whole genome assembler for Next Generation Sequencing data geared for large genomes. It is a hybrid k-mer/read-based assembler that capitalizes on the high accuracy of Illumina sequence by eschewing an explicit error correction step...
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Last updated 1053 days ago by AbhiHorizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-celled eukaryotes, but a number of factors combine to make it far rarer in...Ranbow: a haplotype assembler for polyploid genomes
By Jit 2368 days agowww.molgen.mpg.de - Ranbow is a haplotype assembler for polyploid genomes. It has been developed for the haplotype assembly of the hexaploid sweet potato genome, which is highly heterozygous. Ranbow can also be applied to other polyploid genomes. After a first phasing,...CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
By Jit 2222 days agogithub.com - CSBFinder is a standalone Desktop java application with a graphical user interface, that can also be executed via command line. CSBFinder implements a novel methodology for the discovery, ranking, and taxonomic distribution analysis of colinear...MFannot : a program for the annotation of mitochondrial and plastid genomes
By Jit 1917 days agogithub.com - MFannot is a program for the annotation of mitochondrial and plastid genomes MFannot is a program for the annotation of mitochondrial and plastid genomes. It is a PERL wrapper around a set of diverse, external independent tools. It makes intense...RefKA: A fast and efficient long-read genome assembly approach for large and complex genomes
By Rahul Nayak 1668 days agogithub.com - RefKA, a reference-based approach for long read genome assembly. This approach relies on breaking up a closely related reference genome into bins, aligning k-mers unique to each bin with PacBio reads, and then assembling each bin in parallel...Published a dataset of 363 genomes from approximately 92 percent of bird families
By Jit 1466 days agoA research team published a dataset of 363 genomes from approximately 92 percent of bird families and showed the significance of sampling dense organisms for biodiversity research.
