Jit
Enthusiast computational biologist with business dream !!!
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Referee: Genome assembly quality scores
By Jit 2683 days agogwct.github.io - Modern genome sequencing technologies provide a succint measure of quality at each position in every read, however all of this information is lost in the assembly process. Referee summarizes the quality information from the reads that map to a site...Shasta long read assembler
By Jit 2247 days ago Comments (1)github.com - The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using as input DNA reads generated by Oxford Nanopore flow cells. Computational methods used by the Shasta assembler include: Using...mutatrix: a population genome simulator which generates simulated genomes.
By Jit 2233 days agogithub.com - genome simulation across a population with zeta-distributed allele frequency, snps, insertions, deletions, and multi-nucleotide polymorphisms More at https://github.com/ekg/mutatrix ./mutatrix -S sample -P test/ -p 2 -n 10 reference.fasta
Is reference genome necessary for gene expression study in transcriptome sequencing or for variant discovery in genome sequencing?
Rahul Agarwal 4619 days agoBarber pole worm , sheep pathogen sequenced !!!
By Rahul Agarwal 4571 days agoResearchers have uncovered essential information in the fight against drug resistance in worms.DNA tale of 3 to 4 years old Serbia boy
By Rahul Agarwal 4487 days agoAncient DNA study of Serbian boy!!!Genome of Rainbow Trout Sequenced
By Rahul Agarwal 4337 days agohttp://www.nature.com/ncomms/2014/140422/ncomms4657/full/ncomms4657.html
miRNA database and tools
Last updated 4170 days ago by Rahul AgarwalSince few years miRNA has shown to play important role in therapeutic related research and also known to play vital role in controlling gene expression specifically at transcriptional and post-transcription levels. Here are some important DBs and...
