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Sequence Tube Maps: displays multiple genomic sequences in the form of a tube map
By Jit 2285 days agogithub.com - A JavaScript module for the visualization of genomic sequence graphs. It automatically generates a "tube map"-like visualization of sequence graphs which have been created with vg. (https://github.com/vgteam/vg) Link to working demo:...SeqFu: A Suite of Utilities for the Robust and Reproducible Manipulation of Sequence Files
By Rahul Nayak 1565 days agotelatin.github.io - A general-purpose program to manipulate and parse information from FASTA/FASTQ files, supporting gzipped input files. Includes functions to interleave and de-interleave FASTQ files, to rename sequences and...Chemical Elements of Bioinformatics
By Rahul Agarwal 4666 days agoAmaze by new elements table by Eagle genomics !!!Mulan: MUltiple sequence Local AligNment and conservation visualization tool
By Rahul Nayak 3250 days agomulan.dcode.org - Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strategy that ensures a recapitulation of evolutionary sequence rearrangements (such as inversions and reshuffling) in any of the species. It...NanoSim: nanopore sequence read simulator based on statistical characterization.
By Jit 3099 days agowww.bcgsc.ca - NanoSim, a fast and scalable read simulator that captures the technology-specific features of ONT data and allows for adjustments upon improvement of nanopore sequencing technology. The first step of NanoSim is read characterization, which provides...Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from...
By Jit 2923 days agogithub.com - Breakpointer is a fast tool for locating sequence breakpoints from the alignment of single end reads (SE) produced by next generation sequencing (NGS). It adopts a heuristic method in searching for local mapping signatures created by...Genome sequence-based (sub-)species delineation.
By Abhimanyu Singh 2740 days agohttp://ggdc.dsmz.de/ - The GGDC web service reports digital DDH for a universal and accurate delineation of prokaryotic (sub-)species without inheriting the pitfalls of classic DDH, and also calculates differences in genomic G+C...TRITEX sequence assembly pipeline for Triticeae genomes
By Jit 2489 days agotritexassembly.bitbucket.io - The pipeline is open-source and hosted in a public Bitbucket repository. TRITEX has been run on highly inbred genotypes of barley (Hordeum vulgare), tetraploid wheat (Triticum turgidum) and hexaploid wheat (T. aestivum) with reasonable...Complete genome sequence of Wuhan seafood market pneumonia virus is out !
By Jit 2325 days ago Comments (1)On Jan 10 2020, while news of the first fatality was barely trickling in, the 29,903 letters constituting the viral genome from an affected individual in Wuhan had already been elucidated (even though a few corrections were made subsequently).Submit your SARS-CoV-2 sequence data to GenBank
By Neel 2256 days agoSubmit your SARS-CoV-2 sequence data to GenBank and SRA with our new submission landing page.
